nadavyayon / Intensify3D
Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the experimenter). Intensify3D yields facilitated visualization and quantification of fluorescent signals
☆19Updated 4 years ago
Alternatives and similar repositories for Intensify3D
Users that are interested in Intensify3D are comparing it to the libraries listed below
Sorting:
- Tools for distributed alignment of massive images☆81Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- ☆18Updated 3 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 3 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 2 weeks ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- A template repo used to make new napari plugins☆20Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 weeks ago
- StarDist plugin for napari☆38Updated 8 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated this week
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- 3D shape analysis using deep learning☆24Updated last year
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- ☆36Updated last year
- Optimize image processing workflows in napari☆17Updated 2 weeks ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 2 weeks ago
- MorphoFeatures code and data☆21Updated 2 years ago
- A napari plugin to analysis point spread functions.☆12Updated last month
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- ☆11Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Running compute-intense parts of BigStitcher distributed☆26Updated last month