nadavyayon / Intensify3DLinks
Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the experimenter). Intensify3D yields facilitated visualization and quantification of fluorescent signals
☆19Updated 4 years ago
Alternatives and similar repositories for Intensify3D
Users that are interested in Intensify3D are comparing it to the libraries listed below
Sorting:
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 4 months ago
- Tools for distributed alignment of massive images☆82Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated last month
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆56Updated last week
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- MorphoFeatures code and data☆21Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- A tool for manual pointwise deformable registration using bigdataviewer.☆31Updated 2 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 2 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- ☆43Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- A napari plugin to analysis point spread functions.☆13Updated 2 months ago
- ☆18Updated 3 years ago
- StarDist plugin for napari☆38Updated 10 months ago
- Automated mitochondrial segmentation and tracking.☆32Updated 3 years ago
- ☆11Updated last year
- 3D shape analysis using deep learning☆24Updated last year
- ☆37Updated last year
- Tools for handling FIB-SEM data and annotations☆22Updated 2 months ago
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 2 months ago
- A template repo used to make new napari plugins☆25Updated last week