Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the experimenter). Intensify3D yields facilitated visualization and quantification of fluorescent signals
☆20Mar 14, 2021Updated 5 years ago
Alternatives and similar repositories for Intensify3D
Users that are interested in Intensify3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImgLib2 integration for ClearVolume☆12Feb 17, 2025Updated last year
- ☆13Aug 16, 2024Updated last year
- Single cell Morphology Quality Control (coSMicQC)☆11Updated this week
- A system for building mouse brain atlas from histology series☆11Aug 15, 2020Updated 5 years ago
- ☆18Feb 10, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 9 months ago
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation☆18Sep 10, 2025Updated 7 months ago
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 2 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 8 months ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated 11 months ago
- MultiModal Big Image Data Sharing and Exploration☆19Jan 13, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆25May 16, 2023Updated 2 years ago
- Stitch multiple Visium slides together☆16Oct 16, 2025Updated 6 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Apr 11, 2026Updated 2 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Pipeline for designing custom probes against human genes☆22Jan 30, 2026Updated 2 months ago
- A library to calculate parametric maps in MRI. For details see https://doi.org/10.1016/j.softx.2019.100369☆10Oct 5, 2021Updated 4 years ago
- Proton density fat fraction calculation for MRI☆12Jul 2, 2025Updated 9 months ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆19Dec 2, 2025Updated 4 months ago
- ☆21Sep 9, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Feb 24, 2026Updated 2 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆23Apr 10, 2023Updated 3 years ago
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 4 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Feb 17, 2025Updated last year
- Implementation of "Accurate classification of protein subcellular localization from high throughput microscopy images using deep learning…☆13Oct 19, 2022Updated 3 years ago
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated 7 months ago
- ☆17Jul 12, 2016Updated 9 years ago
- Just when I thought you couldn’t possibly be any dumber, you go and do something like this… and totally redeem yourself!☆26Feb 12, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Last place solutioin to fastMRI Image Reconstruction Challenge 2019 (Single coil track).☆10Dec 8, 2022Updated 3 years ago
- Napari plugin for vollseg☆14Jul 16, 2025Updated 9 months ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆18Apr 21, 2026Updated last week
- An open-source python library for the processing of fluorescence video data☆17Jul 5, 2025Updated 9 months ago
- Chaste - Cancer Heart And Soft Tissue Environment - main public repository☆17Aug 4, 2016Updated 9 years ago
- ☆12Jun 29, 2021Updated 4 years ago
- A simple, lightweight framework for head pose estimation☆25Jan 25, 2024Updated 2 years ago