chrisamiller / fishplot
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
☆166Updated last year
Alternatives and similar repositories for fishplot:
Users that are interested in fishplot are comparing it to the libraries listed below
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆146Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- ☆112Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- deconstructSigs☆140Updated last year
- ATAC-seq snakemake pipeline☆86Updated 5 years ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- ☆116Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆92Updated 5 months ago
- ☆118Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- Pipeline for processing inDrops sequencing data☆75Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 7 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 4 years ago
- A factor analysis package☆99Updated 12 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 6 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Generate IGV style locus tracks from bigWig files in R☆155Updated 4 months ago
- ☆61Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆150Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Updated 2 years ago
- Software program for checking sample matching for NGS data☆129Updated 9 months ago