chrisamiller / fishplotLinks
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
☆171Updated 2 years ago
Alternatives and similar repositories for fishplot
Users that are interested in fishplot are comparing it to the libraries listed below
Sorting:
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- deconstructSigs☆144Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆156Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 2 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆70Updated 3 weeks ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ☆120Updated 2 years ago
- ☆91Updated 5 months ago
- ☆63Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆134Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆118Updated 7 years ago
- Generate IGV style locus tracks from bigWig files in R☆175Updated last year
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated 2 weeks ago