chrisamiller / fishplotLinks
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
☆171Updated 2 years ago
Alternatives and similar repositories for fishplot
Users that are interested in fishplot are comparing it to the libraries listed below
Sorting:
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- deconstructSigs☆143Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- nucleosome calling using ATAC-seq☆108Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆155Updated 2 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 10 months ago
- ☆90Updated 4 months ago
- ☆120Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆173Updated last year
- A tool for bigWig files.☆118Updated 7 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- A factor analysis package☆102Updated 13 years ago
- microRNA profiling pipeline☆78Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆116Updated 4 months ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated 4 months ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- ☆117Updated 2 years ago
- ☆118Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago