genome / scicloneLinks
An R package for inferring the subclonal architecture of tumors
☆122Updated last year
Alternatives and similar repositories for sciclone
Users that are interested in sciclone are comparing it to the libraries listed below
Sorting:
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- ☆71Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated last month
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆51Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- deconstructSigs☆143Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆83Updated last week
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated last month
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆169Updated last year
- ☆117Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- ☆75Updated 4 months ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated 2 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Reference data: BED files, genes, transcripts, variations.☆84Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago