Alternatives and similar repositories for rnaseq-data-analysis-ARCHIVED:

Users that are interested in rnaseq-data-analysis-ARCHIVED are comparing it to the libraries listed below

• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 11 months ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• smped / ngsReports
  ☆22Updated 2 weeks ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated last year
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• vsbuffalo / rna-seq-example
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆16Updated 12 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 4 years ago
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆31Updated 2 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• ratschlab / mmr
  A tool for Read Multi-Mapper Resolution
  ☆23Updated 8 years ago
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 8 years ago
• gaitat / GenomeUPlot
  The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
  ☆31Updated 2 years ago
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆8Updated 6 years ago
• kangk1204 / Octopus-toolkit2
  ☆8Updated 5 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 4 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 10 months ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆17Updated last year
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• favorov / stereogene
  ☆12Updated 4 months ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• ssadedin / variant_calling_pipeline
  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.
  ☆14Updated 11 years ago
• maxplanck-ie / TheWhoTheWhatTheHuh
  "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.
  ☆11Updated 2 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated last year
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago