datacarpentry / rnaseq-data-analysis-ARCHIVEDLinks
☆10Updated 10 years ago
Alternatives and similar repositories for rnaseq-data-analysis-ARCHIVED
Users that are interested in rnaseq-data-analysis-ARCHIVED are comparing it to the libraries listed below
Sorting:
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆22Updated this week
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ☆16Updated last week
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 2 years ago
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- ☆12Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- An R package for annotation of circular RNAs☆10Updated 5 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- ☆14Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆12Updated 2 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 12 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 6 months ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago