NCI-GDC / gdc-dnaseq-cwlView external linksLinks
CWL for GDC DNASeq workflows
☆23Feb 6, 2026Updated last week
Alternatives and similar repositories for gdc-dnaseq-cwl
Users that are interested in gdc-dnaseq-cwl are comparing it to the libraries listed below
Sorting:
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 6 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Nov 3, 2025Updated 3 months ago
- The Gen3 Workflow Execution Service☆10Mar 11, 2022Updated 3 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Python function for TMB snake plots☆16Aug 6, 2020Updated 5 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Oct 16, 2025Updated 4 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated last month
- Seven Bridges Python library for programatic generation of CWL workflows.☆21Oct 26, 2022Updated 3 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- Workflow Execution Service Backend☆20Feb 2, 2026Updated 2 weeks ago
- ☆23Sep 4, 2018Updated 7 years ago
- script + metadata = standalone component☆44Feb 10, 2026Updated last week
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆80Mar 25, 2025Updated 10 months ago
- Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP☆10Updated this week
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Oct 4, 2024Updated last year
- Variant Call Format (VCF) parser☆25Jan 21, 2026Updated 3 weeks ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated 11 months ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 3 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- A translator from WDL to CWL v1.2☆27Jan 19, 2026Updated 3 weeks ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- Overview of GDC Harmonization Workflows☆36May 16, 2023Updated 2 years ago
- CWL experimental grammar☆11Nov 16, 2025Updated 3 months ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Apr 15, 2021Updated 4 years ago
- ☆11Apr 25, 2024Updated last year
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- ☆12Nov 6, 2023Updated 2 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- A new open source tool to run CWL workflows on LSF☆37Nov 24, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- 1,843 Git aliases and scripts☆26Feb 9, 2026Updated last week