CWL for GDC DNASeq workflows
☆23Sep 27, 2026Updated last month
Alternatives and similar repositories for gdc-dnaseq-cwl
Users that are interested in gdc-dnaseq-cwl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 7 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated 6 months ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 10 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 4 months ago
- A new open source tool to run CWL workflows on LSF☆37Nov 24, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Convert CWL to WDL☆17Oct 17, 2016Updated 10 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- CWL experimental grammar☆11Nov 16, 2025Updated 11 months ago
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆24Apr 21, 2026Updated 6 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- The Gen3 Workflow Execution Service☆10Mar 11, 2022Updated 4 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 4 years ago
- Java SDK for the Common Workflow Language standards☆16Oct 30, 2026Updated last week
- Python function for TMB snake plots☆16Feb 12, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆81Mar 25, 2025Updated last year
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆73Aug 22, 2026Updated 2 months ago
- Overview of GDC Harmonization Workflows☆43May 5, 2026Updated 6 months ago
- Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP☆11Updated this week
- ☆23Sep 4, 2018Updated 8 years ago
- ☆11May 27, 2025Updated last year
- A translator from WDL to CWL v1.2☆28Jun 24, 2026Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- A tool for timing complex copy number gains in cancer.☆24Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- cfDNA Sequencing Pipeline with UMI☆12Jun 11, 2026Updated 4 months ago
- Deprecated☆101Aug 12, 2019Updated 7 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Workflow Execution Service Backend☆21Oct 26, 2026Updated last week
- VCF (variant call format) parser☆26Oct 30, 2026Updated last week
- A flexible framework for nucleosome profiling of cell-free DNA☆10May 12, 2025Updated last year
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- A computational tool for processing and differentiating PCR duplicates from biological duplicates☆10Sep 20, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- script + metadata = standalone component☆47Updated this week
- A library for generating an interactive SVG visualization of CWL workflows☆78Aug 15, 2024Updated 2 years ago
- Python pipeline for analysis of SafeSeqS DNA sequencing data.☆11Apr 2, 2018Updated 8 years ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 4 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- ☆12Nov 28, 2018Updated 7 years ago