NCI-GDC / gdc-dnaseq-cwlLinks
CWL for GDC DNASeq workflows
☆22Updated last month
Alternatives and similar repositories for gdc-dnaseq-cwl
Users that are interested in gdc-dnaseq-cwl are comparing it to the libraries listed below
Sorting:
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated 8 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated last week
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆34Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆45Updated 2 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last week
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 11 months ago