inab / WfExS-backend
Workflow Execution Service Backend
☆18Updated this week
Alternatives and similar repositories for WfExS-backend:
Users that are interested in WfExS-backend are comparing it to the libraries listed below
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 2 months ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 8 months ago
- A translator from WDL to CWL v1.2☆27Updated last month
- Python utilities for CWL☆39Updated last week
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆9Updated 2 weeks ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 4 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆19Updated 2 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Seven Bridges Python library for programatic generation of CWL workflows.☆20Updated 2 years ago
- The WES API is a standard way to run and manage portable workflows.☆83Updated 5 months ago
- a place for GA4GH-related wiki pages☆16Updated 7 years ago
- Trigger CWL workflows via GA4GH WES and TES☆17Updated 2 weeks ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆15Updated 2 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated 2 years ago
- CWL for GDC DNASeq workflows☆22Updated last week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆42Updated last year
- ☆10Updated 5 months ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated 8 months ago
- deploy a snakemake pipeline directly from version control (under development)☆23Updated last week
- Python Phenopacket Tools☆15Updated 2 months ago
- Ontology for consent codes and data use requirements☆67Updated 2 years ago
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- An information model for representing variant annotations.☆18Updated this week
- WDL plugin for pytest☆48Updated last year