crukci-bioinformatics / MGA
The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.
☆25Updated 4 years ago
Alternatives and similar repositories for MGA
Users that are interested in MGA are comparing it to the libraries listed below
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 11 months ago
- Allele frequency filter app☆14Updated 3 years ago
- Toolkit for calling and analyzing de novo STR mutations☆13Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Allele frequency filtering for Mendelian variant discovery☆17Updated 8 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Hemang Parikh☆11Updated 9 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Pan gGnome Viewer☆10Updated last year
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- ☆11Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month