common-workflow-library / bio-cwl-toolsLinks
CWL CommandLineTool descriptions for biology/life-sciences related applications
☆79Updated 3 months ago
Alternatives and similar repositories for bio-cwl-tools
Users that are interested in bio-cwl-tools are comparing it to the libraries listed below
Sorting:
- A collection of reusable WDL tasks. Category:Other☆87Updated last week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Testing building mulled containers for multi-requirement tools.☆75Updated this week
- C++ Library to parse Illumina InterOp files☆78Updated last week
- Example Nextflow pipelines and programming techniques☆107Updated last month
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- ☆82Updated 6 years ago
- GA4GH Variation Representation Python Implementation☆57Updated this week
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- ☆82Updated 3 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆88Updated 2 months ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Reference-free duplex sequencing pipeline.☆18Updated 2 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Super small biological datasets for unit testing☆61Updated 5 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- ABRA2☆92Updated 2 years ago
- Small utilities for working with fastq sequence files.☆123Updated 2 years ago
- ☆21Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Structural Variant Index☆74Updated 6 months ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 6 months ago
- Reference genome resource manager☆76Updated last year
- Sequana: a set of Snakemake NGS pipelines☆146Updated 3 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago