Alternatives and similar repositories for bio-cwl-tools

Users that are interested in bio-cwl-tools are comparing it to the libraries listed below

• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 3 weeks ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 6 months ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated 3 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆83Updated this week
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆80Updated 2 weeks ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆119Updated last year
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated last year
• CCDG / Pipeline-Standardization
  ☆82Updated 7 years ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 5 years ago
• relipmoc / skewer
  ☆96Updated 3 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 8 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• GenomiqueENS / dockerfiles
  ☆83Updated 3 years ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆137Updated 3 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated 2 weeks ago
• IARCbioinfo / IARC-nf
  List of IARC bioinformatics pipelines and resources
  ☆55Updated last month
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆41Updated 5 years ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆38Updated last week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆61Updated 2 weeks ago
• alastair-droop / fqtools
  An efficient FASTQ manipulation suite
  ☆138Updated 5 years ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 7 years ago
• nextflow-io / nf-prov
  Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…
  ☆30Updated last month
• deaconjs / ThousandVariantCallersRepo
  Thousand Variant Callers Project Repository
  ☆74Updated 6 years ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆40Updated 4 years ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• nf-core / demultiplex
  Demultiplexing pipeline for sequencing data
  ☆52Updated last week
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 11 months ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆63Updated last week