CWL CommandLineTool descriptions for biology/life-sciences related applications
☆80Mar 25, 2025Updated last year
Alternatives and similar repositories for bio-cwl-tools
Users that are interested in bio-cwl-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Patterns commonly encountered when writing CWL workflows☆26Mar 30, 2022Updated 4 years ago
- CWL experimental grammar☆11Nov 16, 2025Updated 6 months ago
- Python utilities for CWL☆42Updated this week
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆39Apr 13, 2026Updated 2 months ago
- Common Workflow Language reference implementation☆371Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CWL for GDC DNASeq workflows☆24Mar 30, 2026Updated 2 months ago
- Seven Bridges Python library for programatic generation of CWL workflows.☆21Apr 13, 2026Updated 2 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated last month
- A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis☆28Aug 7, 2025Updated 10 months ago
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 4 years ago
- ☆11Apr 22, 2022Updated 4 years ago
- A new open source tool to run CWL workflows on LSF☆37Nov 24, 2022Updated 3 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Typescript data model for Common Workflow Language☆52Mar 3, 2023Updated 3 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- StreamFlow Workflow Manager☆64Updated this week
- Website about the project WorkflowHub☆13May 26, 2026Updated 2 weeks ago
- Create cwl workflows by writing a simple Python script☆40Apr 29, 2020Updated 6 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Nov 7, 2022Updated 3 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆105Jun 23, 2025Updated 11 months ago
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Profile for provenance research object of a CWL workflow run☆19Dec 20, 2022Updated 3 years ago
- ☆13Apr 2, 2025Updated last year
- Trigger CWL workflows via GA4GH WES and TES☆18Jan 19, 2026Updated 4 months ago
- Common Workflow Language tools and workflows by Pitagora-Network☆32Nov 8, 2022Updated 3 years ago
- A translator from WDL to CWL v1.2☆28Jun 8, 2026Updated last week
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Java SDK for the Common Workflow Language standards☆15Jun 8, 2026Updated last week
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆44Jun 4, 2026Updated last week
- A language server for Common Workflow Language☆64Dec 6, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Nov 5, 2024Updated last year
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆932Jun 4, 2026Updated last week
- Framework for testing CWL tools and workflows☆20Updated this week
- A web application to view and share Common Workflow Language workflows☆50Updated this week
- ☆11Feb 16, 2021Updated 5 years ago
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 6 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆33May 6, 2026Updated last month