DataBiosphere / azulLinks
Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP
☆8Updated this week
Alternatives and similar repositories for azul
Users that are interested in azul are comparing it to the libraries listed below
Sorting:
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Project metadata manager for PEPs in Python☆38Updated 10 months ago
- ☆22Updated last year
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- ☆43Updated 9 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 5 months ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 9 years ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Updated last month
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Updated 2 years ago
- Simple walk-throughs of interacting with the DCP as a downstream data consumer.☆17Updated 3 weeks ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 5 months ago
- Parse Illumina sample sheets with Python☆51Updated last year
- Simplifies parallel processing of DNA sequencing reads☆9Updated 10 months ago
- Raw rust bindings for htslib☆9Updated 3 months ago
- Container class to represent genomic locations and support genomic analysis☆22Updated last week
- Utilities for large scale distributed single cell data processing☆24Updated last month
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 4 months ago
- Simple tool to verticalize text delimited files.☆37Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 3 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A tool for timing complex copy number gains in cancer.☆17Updated 2 weeks ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 4 months ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago