DataBiosphere / azul
Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP
☆8Updated this week
Alternatives and similar repositories for azul
Users that are interested in azul are comparing it to the libraries listed below
Sorting:
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- WDL plugin for pytest☆48Updated last year
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated last month
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- WDL tools for parsing, type-checking, and more☆25Updated last month
- Computational Framework to reconstructing tumor clone structures☆15Updated 4 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Simple walk-throughs of interacting with the DCP as a downstream data consumer.☆17Updated this week
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆40Updated 2 months ago
- Stupid Simple Elastic Compute Cloud☆16Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- SEQSpark documentation☆18Updated 4 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Utilities for large scale distributed single cell data processing☆24Updated last week
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 2 months ago
- A better, faster way to count guides in CRISPR screens.☆31Updated last month
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated this week
- ☆22Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- A Github action for running a Snakemake workflow☆58Updated last month
- Fast fusion detection using kallisto☆80Updated 6 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 5 months ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago