sbg / sevenbridges-cwl
Seven Bridges Python library for programatic generation of CWL workflows.
☆20Updated 2 years ago
Alternatives and similar repositories for sevenbridges-cwl:
Users that are interested in sevenbridges-cwl are comparing it to the libraries listed below
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 9 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- A translator from WDL to CWL v1.2☆27Updated 2 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 4 years ago
- SevenBridges Python Api bindings☆46Updated 2 months ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆16Updated 9 months ago
- CWL for GDC DNASeq workflows☆22Updated this week
- R tools to interact with hap.py output☆15Updated 5 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 6 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 7 months ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 7 months ago
- A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…☆19Updated 7 years ago
- TOPMed analysis pipeline☆52Updated last year