An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the Nextflow.io middleware. Includes dockerfile language and IDE-like support for docker.
☆22Aug 9, 2016Updated 10 years ago
Alternatives and similar repositories for NextflowWorkbench
Users that are interested in NextflowWorkbench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- CWL for GDC DNASeq workflows☆24Mar 30, 2026Updated 4 months ago
- Bremges et al. (2015). GigaScience, 4:33.☆12Dec 29, 2023Updated 2 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated 3 months ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- Workflows made easy.☆12Mar 23, 2018Updated 8 years ago
- A metadata commons to store research software metadata☆47Updated this week
- Python tool to run docker containers in sequence, for reproducible computational analysis pipelines☆11Oct 23, 2015Updated 10 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- ☆15Apr 2, 2025Updated last year
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- A translator from WDL to CWL v1.2☆28Jun 24, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- ☆11Dec 8, 2022Updated 3 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 7 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- APIs for discovering genomics tools, their metadata and their containers☆35Mar 28, 2026Updated 4 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 9 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Seven Bridges Python library for programatic generation of CWL workflows.☆21Apr 13, 2026Updated 4 months ago
- X things you should take into consideration if you code for big data analysis☆23May 29, 2018Updated 8 years ago
- Workflows written in common workflow language (CWL)☆14Dec 15, 2018Updated 7 years ago
- High-performance regular expression matching library☆14Jan 28, 2021Updated 5 years ago
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Oct 31, 2017Updated 8 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- A call for contributions to the report of the FAIR Data Expert Group☆16Aug 30, 2017Updated 8 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆17Aug 5, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- this repo contains the draft, images, and code for the Medium blog post on altair themes.☆12Oct 8, 2018Updated 7 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- A variable inspector nbextension for Jupyter☆13Feb 23, 2018Updated 8 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆73Jul 29, 2026Updated 2 weeks ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago