An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the Nextflow.io middleware. Includes dockerfile language and IDE-like support for docker.
☆22Aug 9, 2016Updated 10 years ago
Alternatives and similar repositories for NextflowWorkbench
Users that are interested in NextflowWorkbench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CWL for GDC DNASeq workflows☆23Sep 27, 2026Updated last month
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated 5 months ago
- Bremges et al. (2015). GigaScience, 4:33.☆12Dec 29, 2023Updated 2 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Oct 31, 2017Updated 9 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- Workflows made easy.☆12Mar 23, 2018Updated 8 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- A translator from WDL to CWL v1.2☆28Jun 24, 2026Updated 4 months ago
- A metadata commons to store research software metadata☆48Updated this week
- ☆15Apr 2, 2025Updated last year
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python tool to run docker containers in sequence, for reproducible computational analysis pipelines☆11Oct 23, 2015Updated 11 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- Materials for rstudio::conf 2019☆11Jan 12, 2019Updated 7 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 10 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago
- Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies☆19May 9, 2025Updated last year
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 9 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated 2 years ago
- APIs for discovering genomics tools, their metadata and their containers☆35Oct 18, 2026Updated 2 weeks ago
- Open-source MCP servers that let AI agents operate real lab instruments, with safety limits, read-only modes, audit trails, and a simulat…☆24Sep 26, 2026Updated last month
- X things you should take into consideration if you code for big data analysis☆23May 29, 2018Updated 8 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Oct 13, 2026Updated 2 weeks ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆73Aug 22, 2026Updated 2 months ago
- APEL client and server source code.☆14Sep 21, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A language server for Common Workflow Language☆65Dec 6, 2023Updated 2 years ago
- An attempt to make HLA typing from OxfordNanopore reads (MinION platform)☆13Aug 20, 2018Updated 8 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- ☆13Jun 24, 2016Updated 10 years ago
- akid is a python package written for doing research in Neural Network.☆14Mar 24, 2023Updated 3 years ago
- Conference planning software☆12Feb 6, 2023Updated 3 years ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 4 months ago