tgen / LumosVar
☆11Updated 6 years ago
Alternatives and similar repositories for LumosVar:
Users that are interested in LumosVar are comparing it to the libraries listed below
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 7 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- ☆21Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Filter and prioritize fusion calls☆20Updated 5 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- ☆12Updated 2 months ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Toolkit for calling and analyzing de novo STR mutations☆13Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- Python function for TMB snake plots☆16Updated 4 years ago