☆11Jul 13, 2018Updated 7 years ago
Alternatives and similar repositories for LumosVar
Users that are interested in LumosVar are comparing it to the libraries listed below
Sorting:
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 6 years ago
- ☆23Sep 4, 2018Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Tests Allelic Expression data for extreme imbalance w.r.t. population☆11Oct 8, 2021Updated 4 years ago
- Tools for producing pseudo-cgh of next-generation sequencing data☆18Sep 5, 2016Updated 9 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- ☆81Nov 30, 2018Updated 7 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository…☆51Jun 1, 2018Updated 7 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 8 months ago
- ☆12Dec 8, 2021Updated 4 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 6 years ago
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆21Feb 10, 2026Updated 2 weeks ago
- Variant quality checking scripts.☆11Feb 4, 2016Updated 10 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Apr 16, 2019Updated 6 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 10 months ago
- structural variant database software☆47Feb 16, 2026Updated last week
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 8 years ago
- ☆20Mar 31, 2021Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated last month
- VarFish: comprehensive DNA variant analysis for diagnostics and research☆52Updated this week
- ☆36Mar 16, 2021Updated 4 years ago
- Reference-free duplex sequencing pipeline.☆19Oct 20, 2022Updated 3 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year