tgen / LumosVarLinks
☆11Updated 7 years ago
Alternatives and similar repositories for LumosVar
Users that are interested in LumosVar are comparing it to the libraries listed below
Sorting:
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 2 weeks ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- ☆23Updated 3 weeks ago
- ☆13Updated 8 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- ☆29Updated 4 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago