tgen / LumosVar
☆11Updated 6 years ago
Alternatives and similar repositories for LumosVar:
Users that are interested in LumosVar are comparing it to the libraries listed below
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 weeks ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- extract SV signal from a BAM☆11Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- v2.x of the microassembly based somatic variant caller☆20Updated last week
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago