PGDX / cerebro-paperLinks
☆23Updated 6 years ago
Alternatives and similar repositories for cerebro-paper
Users that are interested in cerebro-paper are comparing it to the libraries listed below
Sorting:
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Clinical interpretation of somatic mutations in cancer☆46Updated 4 months ago
- ☆38Updated 5 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- ☆25Updated 6 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆38Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 4 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 11 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- ☆29Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆46Updated 5 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆25Updated 3 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 3 years ago