PGDX / cerebro-paper
☆23Updated 6 years ago
Related projects: ⓘ
- ☆33Updated last week
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- Burden testing against public controls☆49Updated 6 months ago
- Fork of the Polysolver project☆29Updated 4 years ago
- ☆22Updated 6 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 3 years ago
- ☆36Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆59Updated 5 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆26Updated 6 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆24Updated 8 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆28Updated last year
- A flexible framework for nucleosome profiling of cell-free DNA☆24Updated last year
- An R package for predicting HR deficiency from mutation contexts☆26Updated last year
- VEP Plugin to annotate high-impact five prime UTR variants☆24Updated 3 weeks ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- ☆18Updated 6 years ago
- ☆22Updated this week
- Concordance and contamination estimator for tumor–normal pairs☆53Updated 4 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆28Updated 2 months ago
- for visual evaluation of read support for structural variation☆49Updated 3 months ago
- Kourami: Graph-guided assembly for HLA alleles☆35Updated 5 years ago
- ☆32Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 7 months ago