PGDX / cerebro-paperLinks
☆23Updated 7 years ago
Alternatives and similar repositories for cerebro-paper
Users that are interested in cerebro-paper are comparing it to the libraries listed below
Sorting:
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 3 months ago
- ☆69Updated 3 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 11 months ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- QDNAseq package for Bioconductor☆54Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆36Updated 4 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆46Updated 6 years ago
- ☆43Updated last year
- CN-Learn☆30Updated 6 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆70Updated 2 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated 2 months ago
- ☆22Updated 2 months ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- ☆39Updated 6 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 9 months ago
- ☆26Updated 6 years ago
- Tumor Mutational Burden☆63Updated 6 months ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago