PGDX / cerebro-paper
☆23Updated 6 years ago
Alternatives and similar repositories for cerebro-paper:
Users that are interested in cerebro-paper are comparing it to the libraries listed below
- Fork of the Polysolver project☆31Updated 5 years ago
- ☆29Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated last month
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆38Updated 6 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- ☆47Updated 2 years ago
- ☆19Updated 7 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆27Updated last year
- Burden testing against public controls☆50Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 8 months ago
- ☆68Updated 2 years ago
- ☆24Updated 5 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆78Updated 3 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- ☆38Updated 5 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆24Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year