Python function for TMB snake plots
☆16Feb 12, 2026Updated 5 months ago
Alternatives and similar repositories for TMB_plotter
Users that are interested in TMB_plotter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Apr 25, 2024Updated 2 years ago
- An R wrapper for running the SigProfilerPlotting framework☆10Jan 29, 2026Updated 5 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Updated this week
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆53Feb 8, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Filter and prioritize fusion calls☆20May 26, 2026Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆31Jul 12, 2026Updated last week
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆123May 26, 2026Updated last month
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆29Jun 30, 2026Updated 2 weeks ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Jun 18, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- ☆13Apr 16, 2026Updated 3 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆101Apr 20, 2021Updated 5 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- ☆19Feb 20, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Battenberg R package for subclonal copynumber estimation☆98May 11, 2026Updated 2 months ago
- ☆19Apr 16, 2026Updated 3 months ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 5 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 7 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- visualize CNV data from targeted capture based sequencing data☆36May 10, 2021Updated 5 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated last year
- Variant quality checking scripts.☆12Feb 4, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Mar 8, 2019Updated 7 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆14Jul 12, 2026Updated last week
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆187Jun 18, 2026Updated last month