Python function for TMB snake plots
☆16Feb 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for TMB_plotter
Users that are interested in TMB_plotter are comparing it to the libraries listed below
Sorting:
- ☆11Apr 25, 2024Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated 3 weeks ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Feb 16, 2026Updated last week
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Dec 14, 2021Updated 4 years ago
- ☆12Nov 6, 2023Updated 2 years ago
- ☆18May 8, 2023Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 3 weeks ago
- Variant quality checking scripts.☆11Feb 4, 2016Updated 10 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆52Feb 8, 2026Updated 2 weeks ago
- DriverPower☆26Jan 18, 2025Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- ☆18Jan 30, 2023Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 2 months ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 3 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Filter and prioritize fusion calls☆20Jan 23, 2026Updated last month
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆117Feb 8, 2026Updated 2 weeks ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 7 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆115Sep 2, 2024Updated last year
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last week
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Feb 20, 2026Updated last week
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- An R wrapper for running the SigProfilerPlotting framework☆10Jan 29, 2026Updated 3 weeks ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 6 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 4 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago