Alternatives and similar repositories for mariner

Users that are interested in mariner are comparing it to the libraries listed below

• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated 3 weeks ago
• fulcrumgenomics / prymer
  Python Primer Design Library
  ☆13Updated 2 months ago
• Sentieon / sentieon-models
  Model files for Sentieon variant callers
  ☆16Updated last month
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated this week
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆73Updated 2 months ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆59Updated last week
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last month
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated last month
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• openwdl / workflow-template-wdl
  ☆9Updated 8 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆34Updated 8 months ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated last week
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆75Updated this week
• broadinstitute / seqr-loading-pipelines
  hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
  ☆23Updated last week
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆54Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 3 weeks ago
• dnanexus / dxCompiler
  WDL and CWL compiler for the DNAnexus platform
  ☆34Updated last week
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• ASaiM / framework
  Open-source opinionated Galaxy-based framework for microbiota analysis
  ☆14Updated 4 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆34Updated 7 years ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• Sentieon / sentieon-dnascope-ml
  Sentieon DNAscope + Machine Learning Model
  ☆12Updated 3 months ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 4 years ago