NCI-GDC / gdc-workflow-overview
Overview of GDC Harmonization Workflows
☆29Updated last year
Alternatives and similar repositories for gdc-workflow-overview:
Users that are interested in gdc-workflow-overview are comparing it to the libraries listed below
- Toolkit for benchmarking fusion transcript predictions☆19Updated 8 months ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- ☆23Updated 6 years ago
- Microsatellite Instability Classification using Multiple Instance Learning☆24Updated last month
- ☆12Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Explore and download data from the recount3 project☆34Updated 4 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 6 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆19Updated 7 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Updated 5 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 3 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- ☆28Updated last year
- ☆40Updated 7 years ago
- ☆47Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- ☆38Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 9 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Comprehensive analysis of small RNA sequencing data☆31Updated 10 months ago
- ☆15Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated last month
- Clinical interpretation of somatic mutations in cancer☆45Updated 2 months ago