rbundschuh / SMaSHLinks
A tool for sample swap identification in high throughput sequencing studies
☆10Updated 7 months ago
Alternatives and similar repositories for SMaSH
Users that are interested in SMaSH are comparing it to the libraries listed below
Sorting:
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- ☆23Updated 10 months ago
- Long read to rMATS☆32Updated 2 years ago
- ☆38Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated last week
- for visual evaluation of read support for structural variation☆55Updated last year
- ⛏ HLA predictions from NGS shotgun data☆54Updated 4 months ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated this week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆26Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- ☆44Updated last year
- ☆20Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated this week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Structural variant merging tool☆55Updated last year
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- ☆51Updated 6 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago