BioinformaticsLabAtMUN / Promotech
Machine-learning-based general bacterial promoter prediction tool.
☆42Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Promotech
- ☆25Updated last week
- Bioinformatic Tools for study Evolution of metabolic diversity☆30Updated 8 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆30Updated 2 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆52Updated 3 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆28Updated 3 months ago
- Fast and flexible ORF finder☆62Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆61Updated last week
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆17Updated 2 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- CLI tool to annotate genes with KOfam☆72Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆51Updated last week
- Protein Alignment and Detection Interface☆61Updated 7 months ago
- ☆35Updated 2 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆19Updated 4 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆67Updated 2 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 2 years ago
- A program for detection of tRNA genes☆56Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Similarity networks of biosynthetic gene clusters☆73Updated this week
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆46Updated 3 weeks ago
- PHANOTATE: a tool to annotate phage genomes.☆69Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 10 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆45Updated 8 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- ☆57Updated this week
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year