bvalot / panISaLinks
panISa is a software to search insertion sequence (IS) on resequencing data (bam file)
☆24Updated last year
Alternatives and similar repositories for panISa
Users that are interested in panISa are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆47Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 2 months ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- SeqSero2☆38Updated last year
- ☆20Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Order and orientation of complete bacterial genomes☆28Updated last month
- ☆37Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- ☆54Updated 2 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Bacterial GWAS analysis☆43Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated 3 months ago