🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
☆38Jun 10, 2024Updated 2 years ago
Alternatives and similar repositories for OmicLearn
Users that are interested in OmicLearn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆39Jun 3, 2026Updated last month
- An open-source Python package for accurate and sensitive peptide and protein quantification.☆21Jul 11, 2026Updated last week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆86Jan 6, 2022Updated 4 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 8 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆62Jul 15, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆99Jun 3, 2026Updated last month
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- modular & open DIA search☆111Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆88Nov 21, 2025Updated 8 months ago
- Community-curated tutorials and datasets for ML in proteomics☆61Oct 31, 2025Updated 8 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆191Apr 19, 2024Updated 2 years ago
- ☆21Feb 14, 2025Updated last year
- Infrastructure of AlphaX ecosystem☆56Updated this week
- Python package for investigating the structural context of PTMs☆29Jan 9, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Updated this week
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated 4 months ago
- EuBIC 2023 developer's meeting☆13Jan 16, 2023Updated 3 years ago
- GlyCombo, a combinatorial glycan composition assignment tool☆13May 4, 2026Updated 2 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆39Jul 16, 2026Updated last week
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated last month
- An LC-MS/MS glycan and glycopeptide search engine☆14Sep 15, 2025Updated 10 months ago
- Realtime quality control for mass spectrometry data acquisition☆22May 19, 2026Updated 2 months ago
- A cross-platform proteomics data analysis suite☆311Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆34Jul 16, 2026Updated last week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Jul 2, 2026Updated 3 weeks ago
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 3 months ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆14Jun 25, 2026Updated 3 weeks ago
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Jul 16, 2026Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated last week
- Read/write functions to and from spatialdata for Deep Visual Proteomics☆17Updated this week
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Package that facilitates pulling database entries from KEGG via its REST API☆14Jun 9, 2026Updated last month
- A list of tools on proteomics using deep learning☆109May 14, 2026Updated 2 months ago
- ☆11Feb 4, 2025Updated last year
- ☆17Jun 27, 2024Updated 2 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆132Mar 23, 2026Updated 4 months ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated 2 weeks ago
- ☆15Aug 22, 2023Updated 2 years ago