π§ͺ π₯ Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
β39Jun 10, 2024Updated 2 years ago
Alternatives and similar repositories for OmicLearn
Users that are interested in OmicLearn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquirβ¦β40Jun 3, 2026Updated 4 months ago
- An open-source Python package for accurate and sensitive peptide and protein quantification.β21Oct 1, 2026Updated last week
- This is a collection of minimal code to visualize various aspects of proteomics data.β87Jan 6, 2022Updated 4 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.β94Nov 17, 2025Updated 10 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomesβ62Jul 15, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Iβ¦β98Jun 3, 2026Updated 4 months ago
- MS/MS prediction for peptidesβ25Dec 18, 2020Updated 5 years ago
- modular & open DIA searchβ115Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics dataβ89Nov 21, 2025Updated 10 months ago
- Community-curated tutorials and datasets for ML in proteomicsβ60Oct 31, 2025Updated 11 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.β192Apr 19, 2024Updated 2 years ago
- β21Feb 14, 2025Updated last year
- Infrastructure of AlphaX ecosystemβ59Updated this week
- Python package for investigating the structural context of PTMsβ28Jan 9, 2025Updated last year
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoringβ23Updated this week
- Imputation of missing values of a matrix or data.frame using iterative prediction modelβ37Mar 5, 2026Updated 7 months ago
- EuBIC 2023 developer's meetingβ13Jan 16, 2023Updated 3 years ago
- GlyCombo, a combinatorial glycan composition assignment toolβ13May 4, 2026Updated 5 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Cβ¦β39Oct 1, 2026Updated last week
- Proteomics search & quantification so fast that it feels like magicβ312Updated this week
- An LC-MS/MS glycan and glycopeptide search engineβ14Sep 15, 2025Updated last year
- Realtime quality control for mass spectrometry data acquisitionβ22May 19, 2026Updated 4 months ago
- A cross-platform proteomics data analysis suiteβ325Aug 7, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- β39Updated this week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experimentsβ14Aug 20, 2026Updated last month
- Dataloader for common proteomics search engine outputs into AnnData formatβ14Mar 25, 2026Updated 6 months ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.β15Jun 25, 2026Updated 3 months ago
- Search- and quantification-engine agnostic biological interpretation of proteomics dataβ39Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Pythonβ31Jul 16, 2026Updated 2 months ago
- Read/write functions to and from spatialdata for Deep Visual Proteomicsβ20Updated this week
- Python library for analyzing mass spectrometry proteomics data.β15Mar 20, 2024Updated 2 years ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimizationβ22Apr 28, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Package that facilitates pulling database entries from KEGG via its REST APIβ15Aug 12, 2026Updated 2 months ago
- A list of tools on proteomics using deep learningβ110May 14, 2026Updated 4 months ago
- β11Feb 4, 2025Updated last year
- β17Sep 22, 2026Updated 2 weeks ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rustβ18Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometryβbased proteomicsβ134Mar 23, 2026Updated 6 months ago
- β15Aug 22, 2023Updated 3 years ago