MannLabs / OmicLearnLinks
π§ͺ π₯ Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
β39Updated last year
Alternatives and similar repositories for OmicLearn
Users that are interested in OmicLearn are comparing it to the libraries listed below
Sorting:
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isoβ¦β65Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics dataβ80Updated 2 months ago
- β67Updated last year
- A library for QC report based on MultiQC frameworkβ26Updated last week
- Infrastructure of AlphaX ecosystemβ52Updated this week
- bioinformatics plotting and toolsβ59Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.β82Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for β¦β58Updated 8 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquirβ¦β35Updated 9 months ago
- A collection of available Python tools for Proteomics analysisβ66Updated 6 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw dataβ42Updated last week
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Cβ¦β37Updated last month
- Imputing proteomics data using deep learning modelsβ31Updated 2 months ago
- β38Updated 5 months ago
- Shiny app to easily create publishable plots for scientific papersβ38Updated 5 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clustersβ27Updated 7 years ago
- Python client for PRIDE Archive Rest API.β29Updated 3 weeks ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.β73Updated this week
- β23Updated this week
- Documentation is available here:β23Updated last month
- R package for functionally scoring phosphorylation sitesβ21Updated 6 years ago
- Absolute quantification package based on quantms.ioβ16Updated 3 months ago
- CMap Notebooks for LINCS 2020 Workshopβ49Updated 4 years ago
- Comprehensive Python client for the Uniprot REST APIβ54Updated 3 months ago
- Community-curated tutorials and datasets for ML in proteomicsβ55Updated 2 months ago
- A collection of useful functions for bioinformatics data analysisβ24Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence β¦β83Updated 2 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.β92Updated 2 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.β25Updated 2 years ago
- MS/MS prediction for peptidesβ24Updated 5 years ago