Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
☆32Jan 5, 2025Updated last year
Alternatives and similar repositories for snakemake_UmetaFlow
Users that are interested in snakemake_UmetaFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆23Nov 11, 2024Updated last year
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆17Updated this week
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆34Jun 10, 2026Updated 2 months ago
- data processing for MS-based metabolomics☆15May 28, 2026Updated 2 months ago
- ☆15Jul 4, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆11Apr 16, 2026Updated 4 months ago
- ☆11Apr 25, 2026Updated 3 months ago
- ☆15Jun 3, 2021Updated 5 years ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆57Apr 23, 2026Updated 3 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- R Interface to the ClassyFire REST API☆15May 20, 2026Updated 2 months ago
- R package for optimized LC-MS spectra processing☆30Jun 22, 2026Updated last month
- Prediction of glycopeptide fragment mass spectra by deep learning☆12Feb 20, 2024Updated 2 years ago
- ☆28Nov 30, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆20Jan 24, 2024Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆24Apr 9, 2026Updated 4 months ago
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Jun 28, 2018Updated 8 years ago
- Realtime quality control for mass spectrometry data acquisition☆22May 19, 2026Updated 2 months ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆14May 28, 2026Updated 2 months ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆37Jan 28, 2026Updated 6 months ago
- ☆12Feb 20, 2026Updated 5 months ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆12Apr 22, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MS2Query - machine learning assisted library querying of MS/MS spectra☆58Nov 6, 2025Updated 9 months ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated last year
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆35Aug 19, 2021Updated 4 years ago
- ☆17Jul 16, 2026Updated last month
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆16Jun 1, 2023Updated 3 years ago
- ☆27Jun 30, 2026Updated last month
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆51Jun 23, 2025Updated last year
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆29Aug 19, 2022Updated 3 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Jul 28, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- Ms2 basEd saMple vectOrization (memo) package☆17Jun 13, 2023Updated 3 years ago
- Annotation of in source LC/MS data☆13Oct 19, 2024Updated last year
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆15Sep 24, 2022Updated 3 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆29Mar 16, 2026Updated 5 months ago
- ☆21Apr 20, 2026Updated 3 months ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆36Jun 13, 2026Updated 2 months ago