hms-dbmi / crestree
Neural Crest Fate Decisions
☆10Updated 5 years ago
Alternatives and similar repositories for crestree:
Users that are interested in crestree are comparing it to the libraries listed below
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 11 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆18Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆42Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 9 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆10Updated last year
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated this week
- ☆36Updated 5 months ago
- ☆31Updated 9 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Functions for single cell data analysis☆29Updated 3 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆23Updated 6 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 5 months ago
- Ordering gene-expression and functional events in single-cell experiments☆21Updated 11 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆18Updated 7 months ago
- CAST package☆29Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆59Updated 4 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆31Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- ☆26Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month