hms-dbmi / crestreeLinks
Neural Crest Fate Decisions
☆10Updated 5 years ago
Alternatives and similar repositories for crestree
Users that are interested in crestree are comparing it to the libraries listed below
Sorting:
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated 10 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- ☆10Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Parse ArchR arrow files to anndata h5ad☆12Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Multi-resolution Variational Inference☆22Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- Build predicted cell-cell interaction networks from single-cell data.☆9Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- .h5mu files interface for Seurat☆30Updated last year
- CAST package☆40Updated 7 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆31Updated 9 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- SPATA Package for spatial gene expression analysis☆22Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago