vitkl / orthologsBioMART
One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART
☆22Updated 3 years ago
Alternatives and similar repositories for orthologsBioMART:
Users that are interested in orthologsBioMART are comparing it to the libraries listed below
- Single cell omics biology annotations☆50Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 6 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- ☆34Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆71Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 10 months ago
- Using TCR and expression for sequence embedding☆52Updated last month
- ☆39Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆39Updated last year
- Pan-Cancer Single Cell Classifier☆64Updated 9 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- ☆46Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- Gene group activity utility functions for Scanpy☆67Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated last week
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆63Updated last month
- ☆42Updated 4 months ago
- R package for the analysis of single-cell immune repertoires☆42Updated 3 weeks ago
- .h5mu files interface for Seurat☆28Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆62Updated 2 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 6 months ago
- ☆57Updated 4 years ago