vitkl / orthologsBioMARTLinks
One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART
☆23Updated 3 years ago
Alternatives and similar repositories for orthologsBioMART
Users that are interested in orthologsBioMART are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- Gene group activity utility functions for Scanpy☆83Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated last week
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆73Updated this week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆121Updated 3 weeks ago
- Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.☆26Updated last month
- R package to access DoRothEA's regulons☆149Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆56Updated last year
- Single cell omics biology annotations☆51Updated 3 months ago
- Spatial transcriptomics of heart tissue☆89Updated last year
- Pan-Cancer Single Cell Classifier☆74Updated last year
- Using TCR and expression for sequence embedding☆57Updated 6 months ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆103Updated 3 weeks ago
- ☆61Updated 4 years ago
- ☆47Updated 3 years ago
- Geometry-preserving random sampling☆89Updated 9 months ago
- ☆44Updated 9 months ago
- From geospatial to spatial -omics☆95Updated 4 months ago
- AnnData interoperability in R☆87Updated this week
- software to detect doublets☆93Updated 7 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 4 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated 2 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆156Updated last week
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago