overview of spatial datasets
☆79Feb 19, 2024Updated 2 years ago
Alternatives and similar repositories for spatial-datasets
Users that are interested in spatial-datasets are comparing it to the libraries listed below
Sorting:
- Spatial omics analysis toolbox☆362Feb 12, 2026Updated 2 weeks ago
- Tool to create images and configuration files for Minerva-Story☆16Dec 1, 2025Updated 3 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆109Jan 15, 2026Updated last month
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Aug 7, 2021Updated 4 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Nov 20, 2023Updated 2 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆240Updated this week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Jul 1, 2024Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 8 months ago
- ☆13Feb 15, 2024Updated 2 years ago
- ☆53Apr 1, 2021Updated 4 years ago
- Identify spatial domain☆89May 29, 2025Updated 9 months ago
- Develop custom oligo design pipelines.☆27Updated this week
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆92May 24, 2024Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated 10 months ago
- Spatial alignment of single cell transcriptomic data.☆354Jul 1, 2025Updated 8 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆58Jun 9, 2025Updated 8 months ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆256Feb 9, 2026Updated 2 weeks ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated last year
- Test genes for Spatial Variation☆183May 7, 2024Updated last year
- Multiple-choice microscopy pipeline☆147Feb 16, 2026Updated last week
- Tissue reassembly with generative AI☆24May 22, 2025Updated 9 months ago
- ☆17Mar 18, 2025Updated 11 months ago
- ☆33Feb 25, 2025Updated last year
- Spatial Single Cell Analysis in Python☆553Updated this week
- ☆28Jan 4, 2024Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Dec 2, 2025Updated 2 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆438Jan 22, 2026Updated last month
- ☆42Feb 11, 2026Updated 2 weeks ago
- From geospatial to spatial -omics☆100Feb 12, 2026Updated 2 weeks ago
- ☆131Apr 24, 2024Updated last year
- ☆25Feb 25, 2025Updated last year
- A web-based, time-series visualizer for tracked segmented data.☆13Feb 21, 2026Updated last week
- Image Annotator Web-app using Plotly-Dash, MongoDB, and MLflow☆14Nov 22, 2022Updated 3 years ago
- Results of the experiments performed for the paper "Open-Set Support Vector Machines".☆11Jul 6, 2023Updated 2 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- Spatial-Linked Alignment Tool☆90Dec 20, 2024Updated last year