overview of spatial datasets
☆80Sep 2, 2026Updated this week
Alternatives and similar repositories for spatial-datasets
Users that are interested in spatial-datasets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Sep 7, 2023Updated 2 years ago
- Spatial omics analysis toolbox☆389Updated this week
- Code for the spatialLIBD R/Bioconductor package and shiny app☆113Jul 24, 2026Updated last month
- ☆13Feb 15, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆43Jul 1, 2024Updated 2 years ago
- Tool to create images and configuration files for Minerva-Story☆16Aug 27, 2026Updated last week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆257Jul 12, 2026Updated last month
- Identify spatial domain☆92May 29, 2025Updated last year
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆96Mar 26, 2026Updated 5 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated this week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆49Aug 7, 2021Updated 5 years ago
- ☆53Apr 1, 2021Updated 5 years ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆72Nov 20, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Mar 18, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆372Jul 1, 2025Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated last month
- ☆13Jul 31, 2025Updated last year
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆13Mar 1, 2025Updated last year
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- ☆163Mar 19, 2024Updated 2 years ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆22May 28, 2026Updated 3 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆264Feb 9, 2026Updated 6 months ago
- ☆10Nov 29, 2022Updated 3 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆66Jun 9, 2025Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- ☆138Jun 10, 2022Updated 4 years ago
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- Test genes for Spatial Variation☆189May 7, 2024Updated 2 years ago
- ☆47Jul 24, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆482Jan 22, 2026Updated 7 months ago
- Molecular analysis of pre-invasive lung cancer samples☆14Jan 18, 2019Updated 7 years ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- ☆145Jun 25, 2026Updated 2 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆55Apr 28, 2023Updated 3 years ago
- Spatial Single Cell Analysis in Python☆596Updated this week
- ☆29Jan 4, 2024Updated 2 years ago