Alternatives and similar repositories for ST-deconvoulution

Users that are interested in ST-deconvoulution are comparing it to the libraries listed below

• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 2 years ago
• Tang-Lab-super / ciTLSs
  Cross-modal Identification of Tertiary Lymphoid Structures
  ☆17Updated last year
• KnottLab / pembroRT-CancerCell2023
  Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.
  ☆11Updated last year
• Junjie-Hu / NSCLC-immunotherapy
  ☆24Updated last year
• maximemeylan / Meylan_et_al_2022
  ☆19Updated 3 years ago
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆48Updated 6 months ago
• Patchouli-M / SequencingCancerFinder
  ☆35Updated last month
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆12Updated 9 months ago
• PansccSpat / SpatialMapESCC
  ☆17Updated 8 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆46Updated 2 weeks ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆74Updated 2 years ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 4 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 4 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆36Updated 5 months ago
• Chuxj / CRC-atlas
  ☆27Updated last year
• lhuang1 / Th17_single_cell
  ☆12Updated 3 years ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆84Updated last month
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆56Updated 2 years ago
• YiLab-SC / scHolography
  ☆11Updated last year
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆18Updated 11 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆67Updated 2 years ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆52Updated 11 months ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆37Updated last year
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆68Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆53Updated last month
• jalon9358 / LianLab_CRCLM
  ☆14Updated last year
• LiHongCSBLab / SOAPy
  ☆30Updated 4 months ago