Project Manager for NGS data analysis
☆31Mar 12, 2026Updated last week
Alternatives and similar repositories for pm4ngs
Users that are interested in pm4ngs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis☆27Aug 7, 2025Updated 7 months ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆17Dec 9, 2025Updated 3 months ago
- ☆10Jun 5, 2021Updated 4 years ago
- Incremental building of phylogenetic distance trees☆30Mar 16, 2026Updated last week
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 9 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆136Jan 28, 2026Updated last month
- Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org☆17Oct 1, 2021Updated 4 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Dec 4, 2024Updated last year
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- Using combined evidence from replicates to evaluate ChIP-seq peaks☆20Mar 14, 2026Updated last week
- dbGaP data validation tool repo☆14May 12, 2023Updated 2 years ago
- R API and htmlwidget for Vitessce☆44Aug 13, 2025Updated 7 months ago
- Main repository of the Flint project for Spark and Amazon EMR.☆11Jan 31, 2020Updated 6 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 8 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- TechDoc using Markdown☆15Mar 7, 2014Updated 12 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- ☆10Feb 14, 2022Updated 4 years ago
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 5 years ago
- Yet another ROC curve drawer☆22Dec 2, 2025Updated 3 months ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆27Nov 7, 2024Updated last year
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Nov 12, 2024Updated last year
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Nov 3, 2017Updated 8 years ago
- Website about the project WorkflowHub☆12Feb 12, 2026Updated last month
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- Genome scale metabolic models in SBML format☆10Nov 16, 2021Updated 4 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- IMGT segment library converted to RepSeq.IO JSON format☆13Mar 21, 2023Updated 3 years ago
- ☆26Feb 23, 2026Updated last month
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated last month
- https://grasp.ufv.br/☆16Jul 6, 2023Updated 2 years ago
- ☆16Apr 1, 2025Updated 11 months ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Service discovery for Finagle cluster with Consul.☆10Sep 27, 2018Updated 7 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆31Jul 13, 2023Updated 2 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Dec 23, 2021Updated 4 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Nov 3, 2020Updated 5 years ago
- Introduction to Workflows with Common Workflow Language☆11Apr 17, 2024Updated last year