JinmiaoChenLab / FastIntegrationLinks
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
☆23Updated last year
Alternatives and similar repositories for FastIntegration
Users that are interested in FastIntegration are comparing it to the libraries listed below
Sorting:
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 5 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- ☆29Updated 2 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆22Updated 5 months ago
- ☆43Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆45Updated 3 years ago
- Difference in Intercellular Communication from scRNA-seq data☆24Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- R package for Bioconductor submission☆38Updated 3 years ago
- ☆23Updated 3 months ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆44Updated last week
- ☆33Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- ☆48Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Updated 2 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Updated 9 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Updated last week
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- ☆62Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago