Alternatives and similar repositories for cas-offinder

Users that are interested in cas-offinder are comparing it to the libraries listed below

• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆80Updated 2 years ago
• maximilianh / crisporWebsite
  All source code of the crispor.org website
  ☆82Updated last month
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• mckennalab / FlashFry
  FlashFry: The rapid CRISPR target site characterization tool
  ☆78Updated last year
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆97Updated last month
• dmnfarrell / smallrnaseq
  small rna-seq analysis package
  ☆30Updated 2 years ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆39Updated 10 months ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆28Updated 2 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆87Updated last week
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆112Updated last year
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆81Updated last year
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated 2 months ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆32Updated last month
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 2 weeks ago
• xjtu-omics / msisensor-pro
  Microsatellite Instability (MSI) detection using high-throughput sequencing data.
  ☆113Updated 6 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆94Updated 4 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆49Updated 2 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 4 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆148Updated 2 weeks ago
• Alex-Rosenberg / cell-2015
  Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
  ☆35Updated 9 years ago
• tsailabSJ / circleseq
  ☆23Updated 7 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆55Updated 8 months ago
• BioinfoUNIBA / REDItools2
  ☆59Updated 3 months ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆121Updated 8 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• tseemann / PEAR
  Pair-End AssembeR
  ☆32Updated 11 years ago
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆108Updated 4 years ago
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆100Updated 2 months ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆115Updated 4 years ago