Alternatives and similar repositories for cas-offinder

Users that are interested in cas-offinder are comparing it to the libraries listed below

• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆80Updated 2 years ago
• maximilianh / crisporWebsite
  All source code of the crispor.org website
  ☆79Updated 2 weeks ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆75Updated 3 years ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆27Updated last month
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆39Updated 9 months ago
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆32Updated 4 years ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆111Updated last year
• mckennalab / FlashFry
  FlashFry: The rapid CRISPR target site characterization tool
  ☆78Updated last year
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆31Updated last year
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆97Updated this week
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆85Updated 3 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆48Updated 2 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 3 months ago
• tseemann / PEAR
  Pair-End AssembeR
  ☆32Updated 11 years ago
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 3 weeks ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆44Updated 9 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated 3 weeks ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆92Updated 3 months ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆115Updated 4 years ago
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆78Updated last year
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆97Updated last year
• Alex-Rosenberg / cell-2015
  Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
  ☆35Updated 9 years ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆158Updated this week
• Kennedy-Lab-UW / Duplex-Sequencing
  ☆57Updated 5 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆111Updated 6 months ago
• DiltheyLab / HLA-LA
  Fast HLA type inference from whole-genome data
  ☆137Updated 5 months ago
• crisprVerse / crisprScore
  On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
  ☆20Updated 2 months ago
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆31Updated this week