Alternatives and similar repositories for cas-offinder

Users that are interested in cas-offinder are comparing it to the libraries listed below

• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆69Updated 3 years ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆35Updated 6 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated last year
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆46Updated 2 years ago
• dmnfarrell / smallrnaseq
  small rna-seq analysis package
  ☆30Updated 2 years ago
• maximilianh / crisporWebsite
  All source code of the crispor.org website
  ☆75Updated 4 months ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆25Updated 3 weeks ago
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆30Updated 3 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆102Updated 6 months ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 3 months ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆55Updated 7 years ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆13Updated 5 years ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆110Updated 9 months ago
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆74Updated 11 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated this week
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆85Updated this week
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆91Updated 2 weeks ago
• epi2me-labs / wf-clone-validation
  ☆33Updated last month
• mckennalab / FlashFry
  FlashFry: The rapid CRISPR target site characterization tool
  ☆75Updated 11 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated last year
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆63Updated 10 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆81Updated last week
• tseemann / PEAR
  Pair-End AssembeR
  ☆32Updated 11 years ago
• ponnhide / PySanger
  A Python module to analyze Sanger sequencing results.
  ☆24Updated last year
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆111Updated last year
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆110Updated 2 months ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated last year
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆40Updated 8 years ago
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆26Updated 3 months ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago