EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
☆33Sep 1, 2023Updated 2 years ago
Alternatives and similar repositories for EditR
Users that are interested in EditR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated this week
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆27Jul 28, 2022Updated 3 years ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 8 months ago
- ☆10Jul 10, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- HIVdb webservice client☆12Jan 22, 2026Updated 4 months ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆37Nov 17, 2025Updated 6 months ago
- Collection of R packages that work in harmony for CRISPR gRNA design☆15Nov 21, 2025Updated 6 months ago
- Synthego ICE - Inference of CRISPR Editing software☆69Apr 13, 2026Updated last month
- Co-expression network management based on WGCNA + k-means☆22May 11, 2021Updated 5 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Sep 2, 2025Updated 8 months ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆100Aug 31, 2022Updated 3 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- FlashFry: The rapid CRISPR target site characterization tool☆82Jun 12, 2024Updated last year
- A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.☆17Oct 14, 2024Updated last year
- Software package to design bridge RNAs as described by Durrant & Perry et al.☆24Sep 25, 2025Updated 7 months ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆36May 4, 2026Updated 2 weeks ago
- Webserver and command line tool for annotating engineered plasmids☆141Apr 23, 2026Updated last month
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated 2 years ago
- Software for performing UDiTaS sequencing analysis.☆15Dec 22, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts for analyzing PacBio AAV sequences☆15May 3, 2024Updated 2 years ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆337May 14, 2026Updated last week
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- Anno is a variant annotation tool☆24May 18, 2016Updated 10 years ago
- Webserver and command line tool for annotating engineered plasmids☆17Updated this week
- ☆41Dec 15, 2025Updated 5 months ago
- A simple add-in for Excel supplying functions to calculate the reverse, complement, and reverse-complement of a nucleotide sequence☆44Aug 25, 2022Updated 3 years ago
- Link rstudio.cloud and GitHub☆11Oct 30, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆23Mar 27, 2026Updated last month
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆53Oct 28, 2025Updated 6 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Mar 7, 2022Updated 4 years ago
- List of software/websites/databases/other stuff for genome engineering☆572Jun 20, 2024Updated last year
- All source code of the crispor.org website☆89Updated this week
- flexible barcode and adapter removal☆81Feb 10, 2023Updated 3 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago