Predictive model for CRISPR-mediated DNA repair outcomes through NHEJ/MMEJ, built with machine learning
☆32Nov 8, 2018Updated 7 years ago
Alternatives and similar repositories for inDelphi-model
Users that are interested in inDelphi-model are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for processing and predicting CRISPR/Cas9-generated mutations☆29Feb 25, 2023Updated 3 years ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆15Apr 21, 2023Updated 3 years ago
- Heroku/Dash app for inDelphi.☆11Dec 8, 2022Updated 3 years ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆242Jul 8, 2020Updated 6 years ago
- This tool designs guides for use with the base editor technology.☆13Aug 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the ge…☆13Jul 8, 2021Updated 5 years ago
- CHANGE-seq analysis pipeline☆12Dec 18, 2025Updated 8 months ago
- Code and examples for optical pooled screens (updated protocol).☆15Jan 28, 2024Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆48Jul 27, 2016Updated 10 years ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 5 years ago
- Julia package for visualising genomic data☆16Jan 11, 2024Updated 2 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- Index your Gmail emails in order to ask questions about them using OpenAI conversational models☆11Nov 17, 2023Updated 2 years ago
- Bloom Filter Benchmark for Heterogeneous Hardware.☆10May 19, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Package to Score Sequences using Rule Set 3☆18Nov 10, 2025Updated 9 months ago
- Data preprocessing for IUPUI-CSRC Pedestrian Situated Intent (PSI) benchmark dataset.☆11Oct 5, 2023Updated 2 years ago
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆24Dec 20, 2024Updated last year
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 10 years ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆16Jul 17, 2021Updated 5 years ago
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- circlize examples☆11Jun 23, 2020Updated 6 years ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Feb 5, 2018Updated 8 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- R package with netDx software and data for examples☆13Feb 22, 2023Updated 3 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- Small Delphi unit to enable design-time persistence of TCollection properties with different TCollectionItem classes☆10Dec 5, 2016Updated 9 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆352Aug 20, 2026Updated 2 weeks ago
- COVID-19 Diagnostic Processing Dashboard☆20Jun 30, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Teaching to Include Diversity and Equity in STEM: materials for Physics and Computation☆13Mar 25, 2025Updated last year
- SPL Conqueror is a library to learn the influence of configuration options of configurable software systems on non-functional properties.☆23Jun 17, 2024Updated 2 years ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 11 months ago
- Variant-aware CRISPR off-target nomination☆28Aug 24, 2026Updated last week
- Squanchy is a brand new, easy to learn, general purpose, multi-paradigm, compiled programming language. The language is written from scra…☆15Dec 7, 2019Updated 6 years ago
- List of software/websites/databases/other stuff for genome engineering☆580Jul 29, 2026Updated last month
- ☆60Sep 27, 2021Updated 4 years ago