Predictive model for CRISPR-mediated DNA repair outcomes through NHEJ/MMEJ, built with machine learning
☆32Nov 8, 2018Updated 7 years ago
Alternatives and similar repositories for inDelphi-model
Users that are interested in inDelphi-model are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for processing and predicting CRISPR/Cas9-generated mutations☆28Feb 25, 2023Updated 3 years ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆15Apr 21, 2023Updated 3 years ago
- Heroku/Dash app for inDelphi.☆11Dec 8, 2022Updated 3 years ago
- Automated and variant-aware CRISPR/Cas9 editing outcome predictor☆10Sep 10, 2021Updated 4 years ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆240Jul 8, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 4 years ago
- Code and examples for optical pooled screens (updated protocol).☆15Jan 28, 2024Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Jul 27, 2016Updated 9 years ago
- CHANGE-seq analysis pipeline☆11Dec 18, 2025Updated 5 months ago
- Julia package for visualising genomic data☆16Jan 11, 2024Updated 2 years ago
- Shell bootloader for data science.☆10Jun 7, 2026Updated last week
- This network estimation procedure combines l1-regularized logistic regression with model selection based on the Extended Bayesian Informa…☆10Oct 12, 2023Updated 2 years ago
- Index your Gmail emails in order to ask questions about them using OpenAI conversational models☆11Nov 17, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 5 years ago
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- Package to Score Sequences using Rule Set 3☆16Nov 10, 2025Updated 7 months ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Feb 5, 2018Updated 8 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- circlize examples☆11Jun 23, 2020Updated 5 years ago
- Isaac Genome Alignment Software☆36Apr 7, 2015Updated 11 years ago
- Variant-aware CRISPR off-target nomination☆25Jun 5, 2026Updated last week
- ARIAC conveyor belt repurposed for generic conveyor belt usage☆27Jun 29, 2021Updated 4 years ago
- R package with netDx software and data for examples☆13Feb 22, 2023Updated 3 years ago
- Data preprocessing for IUPUI-CSRC Pedestrian Situated Intent (PSI) benchmark dataset.☆11Oct 5, 2023Updated 2 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- Small Delphi unit to enable design-time persistence of TCollection properties with different TCollectionItem classes☆10Dec 5, 2016Updated 9 years ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆342May 14, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- COVID-19 Diagnostic Processing Dashboard☆20Jun 30, 2023Updated 2 years ago
- ☆58Sep 27, 2021Updated 4 years ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 8 months ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆15Jul 17, 2021Updated 4 years ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated 3 months ago
- List of software/websites/databases/other stuff for genome engineering☆575Jun 20, 2024Updated last year
- Squanchy is a brand new, easy to learn, general purpose, multi-paradigm, compiled programming language. The language is written from scra…☆15Dec 7, 2019Updated 6 years ago