pinellolab / CRISPResso2Links
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
☆314Updated this week
Alternatives and similar repositories for CRISPResso2
Users that are interested in CRISPResso2 are comparing it to the libraries listed below
Sorting:
- A deep learning-based tool to identify splice variants☆457Updated last month
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆236Updated last month
- TCR and BCR assembly from RNA-seq data☆323Updated 3 weeks ago
- Genome-scale protein function classification☆343Updated 2 weeks ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆374Updated last month
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆338Updated this week
- genes and genomes at your fingertips☆399Updated 3 months ago
- Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).☆267Updated 3 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆381Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆429Updated 8 months ago
- A python extension for quick access to bigWig and bigBed files☆233Updated 7 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated 2 weeks ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆179Updated 3 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆835Updated last year
- Step-by-step analysis pipeline for RNA-seq data☆140Updated last year
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆185Updated 4 years ago
- RNA-seq workflow using STAR and DESeq2☆344Updated last year
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆468Updated last week
- A tool to find sequencing data and metadata from public databases.☆584Updated last year
- Bioinformatics Workbook repository☆191Updated last week
- The ViennaRNA Package☆357Updated last month
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆218Updated last month
- Simple oligo analysis and primer design☆180Updated 3 months ago
- ☆272Updated 9 months ago
- Genomic Pre-trained Network☆277Updated 3 weeks ago
- GTEx & TOPMed data production and analysis pipelines☆378Updated 2 months ago
- ENCODE ATAC-seq pipeline☆427Updated last year
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆250Updated last week
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆207Updated last month
- Transcript assembly and quantification for RNA-Seq☆459Updated last week