Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
☆352Aug 20, 2026Updated 2 weeks ago
Alternatives and similar repositories for CRISPResso2
Users that are interested in CRISPResso2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline for the GUIDE-seq assay.☆82Jun 14, 2023Updated 3 years ago
- Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data☆141May 17, 2019Updated 7 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆107Aug 31, 2022Updated 4 years ago
- List of software/websites/databases/other stuff for genome engineering☆579Jul 29, 2026Updated last month
- Source codes and examples for DeepPrime☆15Dec 17, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆31Jul 28, 2022Updated 4 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆48Jul 27, 2016Updated 10 years ago
- Synthego ICE - Inference of CRISPR Editing software☆72Apr 13, 2026Updated 4 months ago
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆28Aug 8, 2023Updated 3 years ago
- Variant-aware CRISPR off-target nomination☆28Aug 24, 2026Updated last week
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆15Apr 21, 2023Updated 3 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 6 years ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆242Jul 8, 2020Updated 6 years ago
- CRISPR Indel, base edit analysis☆11Aug 1, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Aug 8, 2026Updated 3 weeks ago
- Digenome-toolkit ver2.☆15Nov 1, 2021Updated 4 years ago
- ☆10Mar 6, 2025Updated last year
- Package to Score Sequences using Rule Set 3☆18Nov 10, 2025Updated 9 months ago
- All source code of the crispor.org website☆90Updated this week
- Analysis pipeline for the GUIDE-seq assay.☆30Aug 1, 2025Updated last year
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆42Aug 14, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆76Feb 13, 2023Updated 3 years ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆62Updated this week
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated 2 years ago
- CRISPR Cas9 ontarget prediction software☆34Jul 14, 2026Updated last month
- CHANGE-seq analysis pipeline☆12Dec 18, 2025Updated 8 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆111Updated this week
- off-targeting assessment of Cas9 gRNAs☆15Apr 27, 2021Updated 5 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆32Aug 13, 2026Updated 3 weeks ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Sep 1, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,424Updated this week
- a guideRNA database generation tool☆21Mar 3, 2025Updated last year
- FlashFry: The rapid CRISPR target site characterization tool☆83Jul 27, 2026Updated last month
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆103Jul 11, 2023Updated 3 years ago
- toolkit for analyzing genome editing experiments☆21Updated this week
- ☆13Sep 8, 2020Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago