Alternatives and similar repositories for CRISPResso2

Users that are interested in CRISPResso2 are comparing it to the libraries listed below

• Illumina / SpliceAI
  A deep learning-based tool to identify splice variants
  ☆463Updated 2 months ago
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆242Updated this week
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆400Updated last week
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆351Updated last week
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆439Updated 9 months ago
• milaboratory / mixcr
  MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
  ☆376Updated this week
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆383Updated 3 months ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆271Updated 4 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆661Updated 3 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆843Updated last year
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆193Updated last month
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆190Updated 4 years ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆298Updated 2 years ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆341Updated last week
• google / deepsomatic
  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …
  ☆184Updated 4 months ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆251Updated last month
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated last week
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆214Updated this week
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆326Updated last week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆286Updated 3 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆346Updated last month
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆362Updated 2 months ago
• GoekeLab / awesome-nanopore
  A curated list of awesome nanopore analysis tools.
  ☆296Updated 3 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆585Updated last year
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆225Updated 3 weeks ago
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆464Updated this week
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆234Updated 8 months ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆423Updated last year
• aidenlab / juicer
  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
  ☆461Updated last month
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆239Updated 2 weeks ago