Alternatives and similar repositories for CRISPResso2

Users that are interested in CRISPResso2 are comparing it to the libraries listed below

• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆248Updated 2 weeks ago
• Illumina / SpliceAI
  A deep learning-based tool to identify splice variants
  ☆480Updated 6 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆407Updated 4 months ago
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆363Updated last week
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆451Updated last year
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆386Updated 7 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆862Updated last year
• milaboratory / mixcr
  MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
  ☆381Updated this week
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆337Updated last week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆290Updated 7 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆335Updated last month
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆230Updated 2 months ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆275Updated 8 months ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆203Updated 5 years ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆592Updated last year
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆265Updated last month
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆250Updated this week
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆379Updated last month
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆525Updated 3 weeks ago
• Xinglab / rmats-turbo
  ☆289Updated 3 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆693Updated 7 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆204Updated last month
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆258Updated 4 months ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆190Updated 2 weeks ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆162Updated 2 years ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆363Updated 3 weeks ago
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆484Updated last month
• usadellab / Trimmomatic
  ☆284Updated 3 months ago
• nf-core / scrnaseq
  Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…
  ☆310Updated last week
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆232Updated this week