List of software/websites/databases/other stuff for genome engineering
☆571Jun 20, 2024Updated last year
Alternatives and similar repositories for awesome-CRISPR
Users that are interested in awesome-CRISPR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆333Mar 18, 2026Updated last week
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆239Jul 8, 2020Updated 5 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆27Mar 6, 2026Updated 3 weeks ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆97Aug 31, 2022Updated 3 years ago
- Package to Score Sequences using Rule Set 3☆15Nov 10, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 5 years ago
- CRISPR/Cas9 guide RNA Design☆24Feb 20, 2024Updated 2 years ago
- Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data☆140May 17, 2019Updated 6 years ago
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated 2 months ago
- FlashFry: The rapid CRISPR target site characterization tool☆81Jun 12, 2024Updated last year
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,683Mar 9, 2026Updated 2 weeks ago
- All source code of the crispor.org website☆88Updated this week
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Jul 27, 2016Updated 9 years ago
- CRISPR Cas9 ontarget prediction software☆32Mar 3, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆108Feb 15, 2024Updated 2 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Software used to design guide RNA sequences for CRISPR/Cas9 genome editing☆16Apr 13, 2023Updated 2 years ago
- Scripts for processing and predicting CRISPR/Cas9-generated mutations☆28Feb 25, 2023Updated 3 years ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Sep 1, 2023Updated 2 years ago
- End-to-end guide design for CRISPR/Cas9 with machine learning☆138Jun 12, 2023Updated 2 years ago
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- ☆17Sep 4, 2024Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆34Nov 17, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A curated list of awesome Bioinformatics libraries and software.☆3,910Feb 28, 2026Updated last month
- Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening☆52Aug 30, 2017Updated 8 years ago
- A deep learning method for sgRNA off-target propensity prediction.☆15Mar 17, 2020Updated 6 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆868Jul 10, 2024Updated last year
- ☆72Feb 13, 2023Updated 3 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆15Jul 17, 2021Updated 4 years ago
- ☆10Apr 30, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Mining CRISPRs in Environmental Datasets☆122Feb 10, 2023Updated 3 years ago
- Core code for the DeepHF prediction tool☆40Jul 23, 2019Updated 6 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆401Mar 9, 2026Updated 3 weeks ago
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆325Mar 6, 2025Updated last year
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆54Apr 28, 2023Updated 2 years ago
- ChIP-seq analysis notes from Ming Tang☆846Aug 5, 2024Updated last year