mhorlbeck / CRISPRiaDesignLinks
☆36Updated 6 years ago
Alternatives and similar repositories for CRISPRiaDesign
Users that are interested in CRISPRiaDesign are comparing it to the libraries listed below
Sorting:
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 4 months ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- ☆20Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 7 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- Website for the precision medicine workshop☆45Updated 2 weeks ago
- ☆16Updated 8 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago