lucapinello / CRISPRessoLinks
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
☆135Updated 6 years ago
Alternatives and similar repositories for CRISPResso
Users that are interested in CRISPResso are comparing it to the libraries listed below
Sorting:
- python access to UCSC genomes database☆136Updated 4 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- ☆62Updated 8 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆85Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- The Genome Modeling System installer☆79Updated 10 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆81Updated 5 years ago
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆113Updated 6 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Metadata database for ENCODE project☆112Updated this week
- MuTect -- Accurate and sensitive cancer mutation detection☆97Updated 2 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆111Updated 2 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 6 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆183Updated 6 years ago
- DNA sequencing analysis notes from Ming Tang☆145Updated 2 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆239Updated 5 years ago
- Utilities for building and managing bioconda recipes☆103Updated this week
- Tools for manipulating biological data, particularly multiple sequence alignments☆157Updated last week
- RNASeq pipeline☆36Updated 5 years ago
- ncbi-vdb☆92Updated this week
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 8 months ago
- Transcript quantification import for modular pipelines☆141Updated last month
- Detect and visualize target mutations by scanning FastQ files directly☆153Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆41Updated 9 years ago
- Synthego ICE - Inference of CRISPR Editing software☆68Updated last year