lucapinello / CRISPRessoLinks
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
☆135Updated 6 years ago
Alternatives and similar repositories for CRISPResso
Users that are interested in CRISPResso are comparing it to the libraries listed below
Sorting:
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆83Updated 5 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆147Updated 3 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆96Updated 2 years ago
- RNASeq pipeline☆36Updated 5 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆108Updated 2 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆84Updated 6 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 weeks ago
- ☆62Updated 8 years ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆237Updated 4 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆216Updated last year
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- NGS Language Bindings☆119Updated last year
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆138Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆108Updated 2 years ago
- python access to UCSC genomes database☆135Updated 4 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆103Updated 2 years ago
- Gene fusion detection and visualization☆126Updated 3 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- Python biomart API☆65Updated last year
- Analysis pipelines for genomic sequencing data☆68Updated last week
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆111Updated 2 years ago
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆151Updated 3 years ago
- Transcript quantification import for modular pipelines