Alternatives and similar repositories for CRISPResso

Users that are interested in CRISPResso are comparing it to the libraries listed below

• brentp / cruzdb
  python access to UCSC genomes database
  ☆136Updated 5 years ago
• genome / gms
  The Genome Modeling System installer
  ☆78Updated 10 years ago
• johandahlberg / awesome-10x-genomics
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆86Updated 6 years ago
• boutroslab / CRISPRAnalyzeR
  CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
  ☆80Updated 5 years ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 6 years ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• broadinstitute / mutect
  MuTect -- Accurate and sensitive cancer mutation detection
  ☆101Updated 2 years ago
• ENCODE-DCC / encoded
  Metadata database for ENCODE project
  ☆113Updated 2 weeks ago
• crazyhottommy / DNA-seq-analysis
  DNA sequencing analysis notes from Ming Tang
  ☆149Updated 2 years ago
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆92Updated last week
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated last month
• UMCUGenetics / RNASeq
  RNASeq pipeline
  ☆36Updated 6 years ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• morrislab / phylowgs
  Application for inferring subclonal composition and evolution from whole-genome sequencing data.
  ☆113Updated 3 years ago
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 5 years ago
• MicrosoftResearch / Azimuth
  Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
  ☆240Updated 5 years ago
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 7 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆119Updated last year
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 4 years ago
• kundajelab / chipseq_pipeline
  AQUAS TF and histone ChIP-seq pipeline
  ☆111Updated 3 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆143Updated 3 months ago
• Illumina / canvas
  Canvas - Copy number variant (CNV) calling from DNA sequencing data
  ☆128Updated 6 years ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆159Updated 2 weeks ago
• OpenGene / MutScan
  Detect and visualize target mutations by scanning FastQ files directly
  ☆157Updated 3 years ago
• synthego-open / ice
  Synthego ICE - Inference of CRISPR Editing software
  ☆68Updated last year
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated last month
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 5 years ago