End-to-end guide design for CRISPR/Cas9 with machine learning
☆140Jun 12, 2023Updated 3 years ago
Alternatives and similar repositories for Elevation
Users that are interested in Elevation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆242Jul 8, 2020Updated 6 years ago
- Scripts for processing and predicting CRISPR/Cas9-generated mutations☆29Feb 25, 2023Updated 3 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆25Dec 20, 2024Updated last year
- ☆76Feb 13, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆33Aug 13, 2026Updated last month
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- FlashFry: The rapid CRISPR target site characterization tool☆83Jul 27, 2026Updated last month
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆24Jan 8, 2018Updated 8 years ago
- CRISPR Cas9 ontarget prediction software☆34Jul 14, 2026Updated 2 months ago
- Software for performing UDiTaS sequencing analysis.☆15Dec 22, 2022Updated 3 years ago
- ☆20May 13, 2021Updated 5 years ago
- List of software/websites/databases/other stuff for genome engineering☆581Jul 29, 2026Updated last month
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A software for the multispecies design of CRISPR/Cas9 libraries☆38Oct 7, 2022Updated 3 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆22Sep 17, 2018Updated 8 years ago
- A command line tool for updating docstrings in Python files using the OpenAI API☆12Jan 10, 2023Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆16Jul 17, 2021Updated 5 years ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 9 years ago
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆28Aug 8, 2023Updated 3 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- a guideRNA database generation tool☆21Mar 3, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆19Sep 4, 2024Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆107Aug 31, 2022Updated 4 years ago
- Deep neural networks for predicting CpG methylation☆37Apr 11, 2017Updated 9 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆55Apr 28, 2023Updated 3 years ago
- A neural network library based on tensorflow and with true sklearn compatibility.☆11Sep 17, 2016Updated 10 years ago
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated 2 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code accompanying the publication for compressed graph annotation☆13Feb 14, 2019Updated 7 years ago
- Interactive benchmarking of ranking and assignment methods☆17May 14, 2026Updated 4 months ago
- Python wrapper for Circos☆12Jan 8, 2018Updated 8 years ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆30Apr 2, 2026Updated 5 months ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 6 years ago
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data☆141May 17, 2019Updated 7 years ago