rraadd88 / beditor
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
☆19Updated 10 months ago
Alternatives and similar repositories for beditor:
Users that are interested in beditor are comparing it to the libraries listed below
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 11 months ago
- simplified cellranger for long-read data☆18Updated last week
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 10 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆35Updated 2 weeks ago
- ☆38Updated 7 months ago
- BAGEL software☆27Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆21Updated 5 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆15Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- Long read to rMATS☆31Updated last year
- ☆20Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆22Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Processing and plotting tools for genomics data☆20Updated last month
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Updated 2 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated this week
- alternative splicing analysis pipeline☆18Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago