maximilianh / crisporWebsiteLinks
All source code of the crispor.org website
☆83Updated 2 months ago
Alternatives and similar repositories for crisporWebsite
Users that are interested in crisporWebsite are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 5 months ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated this week
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- Module for embedding igv.js in an IPython notebook☆80Updated 9 months ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆97Updated 5 months ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆99Updated last year
- Simple FASTQ quality assessment using Python☆108Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆93Updated last week
- Extract 3D contacts (.pairs) from sequencing alignments☆117Updated 2 weeks ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- A modular Hi-C mapping pipeline☆100Updated 11 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆89Updated 2 weeks ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 11 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last week
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated 3 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 11 months ago