Alternatives and similar repositories for Basset:

Users that are interested in Basset are comparing it to the libraries listed below

• kundajelab / dragonn
  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
  ☆259Updated last year
• cangermueller / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆144Updated 5 years ago
• greenelab / adage
  Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …
  ☆61Updated 8 years ago
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆428Updated this week
• pimentel / deep_learning_papers
  A place to collect papers that are related to deep learning and computational biology
  ☆186Updated 9 years ago
• uci-cbcl / DanQ
  A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
  ☆159Updated 8 years ago
• kipoi / models
  Model zoo for genomics
  ☆166Updated 8 months ago
• uci-cbcl / D-GEX
  Deep learning for gene expression inference
  ☆146Updated 6 years ago
• FunctionLab / selene
  a framework for training sequence-level deep learning networks
  ☆378Updated 3 months ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆258Updated 3 years ago
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆135Updated last year
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆114Updated 3 years ago
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆226Updated 2 months ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆235Updated 11 months ago
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆62Updated 4 years ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆392Updated 9 months ago
• kundajelab / atac_dnase_pipelines
  ATAC-seq and DNase-seq processing pipeline
  ☆165Updated 2 years ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆127Updated 2 months ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆151Updated 8 months ago
• vanessajurtz / lasagne4bio
  ☆107Updated 6 years ago
• aidenlab / juicer
  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
  ☆433Updated 4 months ago
• pnpnpn / dna2vec
  dna2vec: Consistent vector representations of variable-length k-mers
  ☆184Updated 2 years ago
• Bjoux2 / DeepLearning-in-Bioinformatics
  For anyone who are eager to applying deep learning in bioinformatics!
  ☆124Updated 6 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆212Updated 10 months ago
• bioinform / neusomatic
  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
  ☆170Updated 3 years ago
• BenLangmead / comp-genomics-class
  Code and examples for JHU Computational Genomics class
  ☆299Updated 5 months ago
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 5 years ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆707Updated this week
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆199Updated 4 months ago
• PMBio / scLVM
  scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…
  ☆105Updated 2 years ago