michael-weinstein / dsNickFury3PlusOrchidLinks
dsNickFury is for comparing a CRISPR target site against all other potential sites in a genome. Orchid is a package I'm developing to go with it for iterative CRISPR analysis over an exome.
☆13Updated 7 years ago
Alternatives and similar repositories for dsNickFury3PlusOrchid
Users that are interested in dsNickFury3PlusOrchid are comparing it to the libraries listed below
Sorting:
- ☆35Updated 6 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- Python package to plot sequence logos☆29Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Updated 4 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated 2 weeks ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- A software tool for personalized and allele-specific CRISPR editing.☆17Updated 3 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated last month
- Package to Score Sequences using Rule Set 3☆11Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- Bioinformatics tools for Python☆25Updated 6 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆42Updated 6 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 9 months ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 11 months ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆38Updated 5 years ago
- Analysis pipeline for the GUIDE-seq assay.☆26Updated last month
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- ☆62Updated 2 years ago