SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.
☆15Jul 17, 2021Updated 4 years ago
Alternatives and similar repositories for SPROUT
Users that are interested in SPROUT are comparing it to the libraries listed below
Sorting:
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Scripts for processing and predicting CRISPR/Cas9-generated mutations☆28Feb 25, 2023Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Nov 17, 2025Updated 4 months ago
- ☆26Oct 15, 2020Updated 5 years ago
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- Exploratory data analysis for pooled CRISPR/Cas9 screens☆21Mar 6, 2017Updated 9 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Jul 20, 2021Updated 4 years ago
- ☆13Updated this week
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆25Jan 8, 2018Updated 8 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Jul 27, 2016Updated 9 years ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆26Mar 6, 2026Updated 2 weeks ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆239Jul 8, 2020Updated 5 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 8 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 7 years ago
- A preliminary attempt at complete automation of bioinformatics☆12Feb 17, 2025Updated last year
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆36Mar 2, 2026Updated 2 weeks ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- ☆31Oct 16, 2020Updated 5 years ago
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- ☆22Jun 5, 2017Updated 8 years ago
- This repo is mainly for beginners to intermediate level ML/Bioiniformatics engineers/students/enthusiasts. It mainly focus on creating a …☆15Dec 28, 2024Updated last year
- ☆58Sep 27, 2021Updated 4 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆15Jan 3, 2026Updated 2 months ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Feb 5, 2018Updated 8 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- The new and very much improved fishlanguage.com☆10Mar 4, 2023Updated 3 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆29Mar 12, 2026Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆81Jun 14, 2023Updated 2 years ago
- Run and Analyse SLiM Population Genetics Forward Simulations from R.☆10Nov 26, 2025Updated 3 months ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated 2 weeks ago
- software package for integrative genetic association analysis☆35Jul 8, 2023Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆97Aug 31, 2022Updated 3 years ago
- All source code of the crispor.org website☆88Updated this week
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago