amirmohan / SPROUT
SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.
☆16Updated 3 years ago
Alternatives and similar repositories for SPROUT:
Users that are interested in SPROUT are comparing it to the libraries listed below
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated 11 months ago
- Universal RObust Peak Annotator☆15Updated last year
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆20Updated 9 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆14Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated 11 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated 2 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆17Updated 3 months ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆53Updated 2 weeks ago
- ClinVar Mapping and Annotation Toolkit☆19Updated last week
- Annotating principal splice isoforms☆14Updated 6 months ago
- This BLENDER has been sunsetted☆16Updated 6 months ago
- gatk4 RNA variant calling pipeline☆46Updated last week
- A genome browser in your Jupyter notebook☆31Updated 4 months ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated 7 months ago
- iCount, protein-RNA interaction analytics☆23Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- A python package for showing JBrowse views☆24Updated last year
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆31Updated 2 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆14Updated 3 weeks ago
- visual analysis of your VCF files☆32Updated 2 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 6 years ago
- Plot multiple sequence alignment (MSA)☆14Updated 6 months ago
- ☆22Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated 10 months ago
- for visual evaluation of read support for structural variation☆52Updated 10 months ago