Alternatives and similar repositories for SPROUT

Users that are interested in SPROUT are comparing it to the libraries listed below

• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆32Updated 2 years ago
• HKU-BAL / Clair3-Trio
  Clair3-Trio: variant calling in trio using Nanopore long-reads
  ☆15Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated last year
• MBaysanLab / vcf-observer
  VCF Observer is a VCF file analysis, comparison, and visualization tool.
  ☆17Updated 5 months ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 9 months ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆18Updated last month
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 months ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆28Updated last year
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated 10 months ago
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆19Updated last year
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆12Updated 5 years ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆35Updated last month
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated 9 months ago
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆28Updated 2 weeks ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated last month
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 4 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆51Updated last month
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 8 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆21Updated last year
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆31Updated 3 weeks ago
• vicruiser / 3Dmapper
  Map genetic variants and protein positions to protein interfaces in 3D
  ☆13Updated last year
• soedinglab / BaMMmotif2
  Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…
  ☆14Updated 4 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• GenomicsAotearoa / Kakapo
  Scripts and code for Kākāpō genomic data
  ☆14Updated last year
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆24Updated 9 months ago
• ImperialCardioGenetics / uORFs
  ☆18Updated 5 years ago