Alternatives and similar repositories for SPROUT

Users that are interested in SPROUT are comparing it to the libraries listed below

• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆35Updated 2 years ago
• HKU-BAL / Clair3-Trio
  Clair3-Trio: variant calling in trio using Nanopore long-reads
  ☆16Updated last year
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆16Updated last year
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆66Updated last month
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated 2 months ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆44Updated last week
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆39Updated 4 months ago
• keoughkath / AlleleAnalyzer
  A software tool for personalized and allele-specific CRISPR editing.
  ☆18Updated 3 years ago
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆19Updated last year
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆22Updated 2 years ago
• IntelLabs / Open-Omics-Acceleration-Framework
  Intel lab's open sourced data science framework for accelerating digital biology
  ☆49Updated 2 weeks ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 months ago
• MBaysanLab / vcf-observer
  VCF Observer is a VCF file analysis, comparison, and visualization tool.
  ☆18Updated last year
• zichner / primerDesign
  A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
  ☆47Updated 8 years ago
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated 2 years ago
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated last year
• zd105 / AllEnricher
  A comprehensive gene set function enrichment tool for multiple species.
  ☆14Updated 5 years ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆28Updated last week
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆16Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆59Updated 10 months ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆28Updated last year
• liudan111 / EvoMIL
  Prediction of virus-host association using protein language models and multiple instance learning
  ☆21Updated last year
• ncherric / Iliad
  ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
  ☆28Updated 2 years ago
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated last year
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆47Updated 9 years ago