Synthego ICE - Inference of CRISPR Editing software
☆70Mar 1, 2024Updated 2 years ago
Alternatives and similar repositories for ice
Users that are interested in ice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆335Apr 2, 2026Updated 2 weeks ago
- All source code of the crispor.org website☆88Updated this week
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆28Aug 8, 2023Updated 2 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆36Mar 26, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Sep 1, 2023Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆97Aug 31, 2022Updated 3 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated 2 months ago
- Code for "Disentangling images with Lie group transformations and sparse coding" (2023).☆13May 24, 2021Updated 4 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19May 26, 2024Updated last year
- Scripts for processing and predicting CRISPR/Cas9-generated mutations☆28Feb 25, 2023Updated 3 years ago
- ☆16Jul 16, 2016Updated 9 years ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆239Jul 8, 2020Updated 5 years ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆25Apr 2, 2026Updated 2 weeks ago
- Digenome-toolkit ver2.☆16Nov 1, 2021Updated 4 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- Web based Registry platform for managing synthetic biological parts☆42May 16, 2024Updated last year
- Example usage of the Benchling API: https://docs.benchling.com/☆36Jun 10, 2025Updated 10 months ago
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆122Apr 7, 2026Updated last week
- A no hassle tool for analyzing your favorite CRISPR screen dataset!☆11Apr 16, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆48Jan 17, 2021Updated 5 years ago
- Rust wrapper of the BWA C API☆19May 23, 2025Updated 10 months ago
- 🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing dat…☆23May 22, 2025Updated 10 months ago
- Maximum likelihood demultiplexing☆52Feb 14, 2025Updated last year
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆26Jul 28, 2022Updated 3 years ago
- A parallel implementation of the bzip2 data compressor in python, this data compression pipeline is using algorithms like Burrows–Wheeler…☆13Jun 29, 2022Updated 3 years ago
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.☆33Mar 27, 2018Updated 8 years ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Feb 8, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Docker image as base for building full MAKER image☆11Feb 28, 2022Updated 4 years ago
- Genome browser to visualize and analyze genomic data☆13Nov 22, 2021Updated 4 years ago
- An R package for the Monte Carlo simulation of sequence evolution☆19May 6, 2014Updated 11 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆27Mar 6, 2026Updated last month
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 5 months ago
- Source codes and examples for DeepPrime☆14Dec 17, 2024Updated last year
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2018Updated 7 years ago