synthego-open / iceLinks
Synthego ICE - Inference of CRISPR Editing software
☆69Updated last year
Alternatives and similar repositories for ice
Users that are interested in ice are comparing it to the libraries listed below
Sorting:
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Updated 9 years ago
- All source code of the crispor.org website☆86Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆26Updated last month
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- FlashFry: The rapid CRISPR target site characterization tool☆79Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 5 months ago
- Parsing tools for GTF (gene transfer format) files☆125Updated 11 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 3 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- Fast and flexible ORF finder☆77Updated 4 years ago
- Python biomart API☆69Updated 2 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆159Updated last month
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- A Python package for pharmacogenomics (PGx) research☆82Updated 3 weeks ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated last week
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- Config files used to define parameters specific to compute environments at different Institutions☆107Updated this week
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆27Updated 2 years ago
- ☆167Updated last week
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Efficient target prediction incorporating accessibility of interaction sites☆49Updated 4 months ago
- Extension for Jupyter which integrates igv.js☆154Updated 3 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 7 months ago
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆34Updated 9 years ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago