Synthego ICE - Inference of CRISPR Editing software
☆69Mar 1, 2024Updated 2 years ago
Alternatives and similar repositories for ice
Users that are interested in ice are comparing it to the libraries listed below
Sorting:
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Sep 1, 2023Updated 2 years ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆332Feb 24, 2026Updated last week
- All source code of the crispor.org website☆87Updated this week
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆96Aug 31, 2022Updated 3 years ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆36Updated this week
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated last month
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19May 26, 2024Updated last year
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- NGS perl modules☆11Feb 28, 2026Updated last week
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆239Jul 8, 2020Updated 5 years ago
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆28Aug 8, 2023Updated 2 years ago
- Code for "Disentangling images with Lie group transformations and sparse coding" (2023).☆13May 24, 2021Updated 4 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Contrastive multi-omics association learning☆12Sep 18, 2025Updated 5 months ago
- Genome browser to visualize and analyze genomic data☆13Nov 22, 2021Updated 4 years ago
- Digenome-toolkit ver2.☆16Nov 1, 2021Updated 4 years ago
- A parallel implementation of the bzip2 data compressor in python, this data compression pipeline is using algorithms like Burrows–Wheeler…☆13Jun 29, 2022Updated 3 years ago
- ☆18Jul 9, 2018Updated 7 years ago
- An R package for the Monte Carlo simulation of sequence evolution☆19May 6, 2014Updated 11 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- Web based Registry platform for managing synthetic biological parts☆42May 16, 2024Updated last year
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 3 months ago
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2018Updated 7 years ago
- Maximum likelihood demultiplexing☆51Feb 14, 2025Updated last year
- PRS-on-SPARK☆18Feb 4, 2021Updated 5 years ago
- ☆16Jul 16, 2016Updated 9 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆52Nov 21, 2025Updated 3 months ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- Rust wrapper of the BWA C API☆18May 23, 2025Updated 9 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Feb 6, 2023Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆26Dec 5, 2025Updated 3 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆26Jul 28, 2022Updated 3 years ago