Alternatives and similar repositories for PrimeDesign:

Users that are interested in PrimeDesign are comparing it to the libraries listed below

• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 3 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆24Updated 10 months ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆40Updated 8 years ago
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated 11 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆37Updated 2 weeks ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆33Updated 3 months ago
• gagneurlab / absplice
  ☆36Updated 6 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆14Updated last year
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆30Updated 2 months ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆64Updated last year
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆51Updated 4 years ago
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆32Updated 2 months ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆20Updated last year
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆23Updated 3 weeks ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated last year
• dohlee / snakemake-wrappers
  Snakemake wrappers for bioinformatics.
  ☆18Updated 2 years ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆61Updated 5 months ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆13Updated 4 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 10 months ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆57Updated last year
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆31Updated 3 months ago
• ricomnl / bioinformatics-pipeline-tutorial
  A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.
  ☆15Updated 2 years ago
• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆33Updated 7 months ago
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆29Updated 3 years ago
• Illumina / PrimateAI-3D
  ☆65Updated 3 weeks ago
• tomazc / iCount
  iCount, protein-RNA interaction analytics
  ☆23Updated 3 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆48Updated last week
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆43Updated this week
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆76Updated last year