Alternatives and similar repositories for PrimeDesign

Users that are interested in PrimeDesign are comparing it to the libraries listed below

• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆95Updated 3 years ago
• MoriarityLab / EditR
  EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
  ☆33Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆72Updated last month
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆46Updated 9 years ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆16Updated 5 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated last week
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆15Updated 4 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated 3 weeks ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆33Updated last year
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆29Updated 4 months ago
• feldman4 / dna-barcodes
  Generate robust DNA barcode sets
  ☆33Updated last year
• crisprVerse / crisprScore
  On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
  ☆24Updated last month
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated last month
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆35Updated last year
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆91Updated 4 months ago
• Alex-Rosenberg / cell-2015
  Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
  ☆34Updated 9 years ago
• refresh-bio / SPLASH
  ☆84Updated 3 months ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆122Updated 10 months ago
• mckennalab / FlashFry
  FlashFry: The rapid CRISPR target site characterization tool
  ☆77Updated last year
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last month
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 4 months ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆63Updated 5 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆42Updated last week
• crisprVerse / crisprDesign
  Comprehensive design of CRISPR gRNAs for nucleases and base editors
  ☆26Updated 3 weeks ago
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆34Updated 2 years ago
• klarman-cell-observatory / Riboseq-nuORFs
  ☆11Updated 5 years ago