pinellolab / PrimeDesignLinks
Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
☆25Updated 3 years ago
Alternatives and similar repositories for PrimeDesign
Users that are interested in PrimeDesign are comparing it to the libraries listed below
Sorting:
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆32Updated last year
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆93Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆27Updated 3 weeks ago
- ☆65Updated 6 months ago
- Python package to analyze DNA methylation data☆43Updated 9 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- Module for embedding igv.js in an IPython notebook☆78Updated 6 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆30Updated last year
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆48Updated 2 years ago
- ☆72Updated 2 months ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆43Updated 9 years ago
- Fast and flexible ORF finder☆73Updated 3 years ago
- Generate robust DNA barcode sets☆32Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- Making bioinformatics fun again☆75Updated 2 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- All source code of the crispor.org website☆79Updated 7 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last month
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- ☆39Updated last month
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆38Updated 3 weeks ago
- FlashFry: The rapid CRISPR target site characterization tool☆76Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆67Updated 3 weeks ago
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆47Updated this week
- Python package to annotate and visualize gene fusions.☆64Updated 11 months ago