Alternatives and similar repositories for PrimeDesign

Users that are interested in PrimeDesign are comparing it to the libraries listed below

• MoriarityLab / EditR
  EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
  ☆32Updated 2 years ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆94Updated 3 years ago
• Illumina / PrimateAI-3D
  ☆67Updated 6 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated last week
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆16Updated 5 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆31Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆75Updated 3 years ago
• Illumina / PromoterAI
  ☆76Updated 2 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• feldman4 / dna-barcodes
  Generate robust DNA barcode sets
  ☆32Updated last year
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated 3 months ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆44Updated 9 years ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆27Updated last month
• Alex-Rosenberg / cell-2015
  Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
  ☆35Updated 9 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆121Updated 6 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆48Updated 2 years ago
• dohlee / metheor
  Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
  ☆47Updated 3 weeks ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 4 years ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆53Updated 2 weeks ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆43Updated 10 months ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆60Updated 5 years ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆39Updated 9 months ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆66Updated last week
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆32Updated 9 months ago
• ponnhide / PySanger
  A Python module to analyze Sanger sequencing results.
  ☆24Updated last year
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆38Updated last week
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆35Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated last month