Alternatives and similar repositories for PrimeDesign

Users that are interested in PrimeDesign are comparing it to the libraries listed below

• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆95Updated 3 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆47Updated 9 years ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆29Updated 5 months ago
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated last month
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 4 years ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆33Updated last year
• MoriarityLab / EditR
  EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
  ☆33Updated 2 years ago
• Alex-Rosenberg / cell-2015
  Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
  ☆34Updated 9 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated 2 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆90Updated 2 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆58Updated last week
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated 11 months ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆15Updated 4 years ago
• feldman4 / dna-barcodes
  Generate robust DNA barcode sets
  ☆33Updated last year
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆125Updated 10 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated 2 months ago
• mckennalab / FlashFry
  FlashFry: The rapid CRISPR target site characterization tool
  ☆79Updated last year
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆17Updated 5 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 3 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated this week
• Illumina / PrimateAI-3D
  ☆72Updated 2 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆92Updated 5 months ago
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆84Updated last year
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆34Updated 2 years ago
• riboviz / riboviz
  Analysis and Visualization of Ribosome Profiling Data
  ☆31Updated 4 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆99Updated last month
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆44Updated last week