pinellolab / PrimeDesign
Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
☆23Updated 2 years ago
Alternatives and similar repositories for PrimeDesign:
Users that are interested in PrimeDesign are comparing it to the libraries listed below
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 9 months ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated 10 months ago
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 2 weeks ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆36Updated this week
- ☆33Updated 5 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated 11 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 9 months ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated last month
- Analysis pipeline for the GUIDE-seq assay.☆23Updated last week
- Package to Score Sequences using Rule Set 3☆11Updated 11 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆31Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated last year
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆15Updated 2 years ago
- A genome browser in your Jupyter notebook☆30Updated last month
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆21Updated this week
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆14Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 5 months ago
- ☆11Updated 5 years ago
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated 8 months ago
- CRISPR Indel, base edit analysis☆10Updated 4 years ago
- Public repository for ShapeMapper 2 releases☆32Updated 2 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆33Updated 2 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆14Updated 7 years ago
- A library for counting small kmer frequencies in nucleotide sequences.☆24Updated 3 months ago