CityUHK-CompBio / HTSanalyzeR2
HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput data
☆13Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for HTSanalyzeR2
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Personal notes about work- and coding-related topics☆18Updated last year
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- Tutorial Website☆53Updated 3 years ago
- tutorial on pggb☆27Updated 10 months ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 5 years ago
- ☆51Updated 6 years ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆29Updated 5 years ago
- My youtube programming scripts☆39Updated this week
- documentation for trackViewer☆29Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆55Updated 4 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆46Updated 4 years ago
- Create KEGG.db Package☆58Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 6 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆46Updated 5 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆46Updated 2 months ago
- Transcriptomics Visualization R package.☆58Updated 10 months ago
- ☆47Updated 3 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆75Updated last month
- ☆53Updated 3 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆89Updated 7 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 3 years ago
- A list of alternative splicing analysis resources☆37Updated last week
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated 3 weeks ago
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- ☆24Updated 4 years ago