HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput data
☆14Dec 2, 2020Updated 5 years ago
Alternatives and similar repositories for HTSanalyzeR2
Users that are interested in HTSanalyzeR2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Apr 26, 2020Updated 6 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- A Flash solution of Danmaku Playing on Mac.☆13Aug 8, 2014Updated 11 years ago
- Class to view Alphafold models☆11Jan 20, 2023Updated 3 years ago
- A hacky little interface to call the Enrichr functional enrichment tool from R.☆13Dec 13, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package for the analysis of OK-Seq data to study DNA replication fork directionality: from count matrices, RFD calculation to inititati…☆12Feb 8, 2023Updated 3 years ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆33Jul 11, 2025Updated 10 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆21May 2, 2022Updated 4 years ago
- Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]☆19Mar 9, 2021Updated 5 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 3 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆14Mar 25, 2022Updated 4 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 3 years ago
- ☆19Aug 29, 2025Updated 8 months ago
- Code accompanying the paper "Radiomics for glioblastoma survival analysis in pre-operative MRI: exploring feature robustness, class bound…☆11Aug 9, 2020Updated 5 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated last month
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated 9 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 3 months ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 3 years ago
- This is the project for RSNA Intracranial Hemorrhage Detection hosted on Kaggle in 2019.☆13Nov 25, 2019Updated 6 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 2 months ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- Daily usage script recording☆12Apr 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated last year
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 6 years ago
- ☆16Feb 26, 2026Updated 2 months ago
- ☆13Sep 24, 2025Updated 8 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 5 years ago
- ☆15Dec 6, 2020Updated 5 years ago