McGranahanLab / TcellExTRECTLinks
☆47Updated 6 months ago
Alternatives and similar repositories for TcellExTRECT
Users that are interested in TcellExTRECT are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- ☆49Updated 11 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆33Updated 6 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ☆34Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆34Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- ☆82Updated last year
- ☆32Updated 5 months ago
- ☆17Updated last year
- ☆47Updated 5 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 3 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆29Updated 7 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆78Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago