Microbiology / OpenMetagenomeToolkitLinks
Making Metagenomes Manageable
☆12Updated 8 years ago
Alternatives and similar repositories for OpenMetagenomeToolkit
Users that are interested in OpenMetagenomeToolkit are comparing it to the libraries listed below
Sorting:
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- ☆23Updated 7 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- ☆12Updated 9 years ago
- ☆53Updated 4 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆17Updated last year
- Repository of our application for human-augmented binning☆27Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 8 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- Detection of NCLDV signatures in 'omic data☆35Updated 2 weeks ago