xutaodeng / EnsembleAssemblerLinks
EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms
☆10Updated 10 years ago
Alternatives and similar repositories for EnsembleAssembler
Users that are interested in EnsembleAssembler are comparing it to the libraries listed below
Sorting:
- de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆98Updated 5 months ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆22Updated 9 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- ☆132Updated this week
- WtP: Phage identification via nextflow and docker or singularity☆105Updated last week
- Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction).☆20Updated 8 years ago
- Phylogenetic placement and downstream analysis☆87Updated 2 months ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- A Better Sequencing Simulator for Metagenomics☆20Updated 5 years ago
- ☆84Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated 2 weeks ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- Long-read metagenomic analysis☆106Updated 2 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 2 months ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- Long-read mock community experiments☆105Updated 4 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- StrainFinder☆27Updated 7 years ago
- IS mapping software☆56Updated 3 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆71Updated 3 weeks ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆63Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- SKESA assembler☆123Updated last year