xutaodeng / EnsembleAssembler
EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms
☆9Updated 9 years ago
Related projects: ⓘ
- ☆25Updated 3 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 7 years ago
- de novo virus assembler of Illumina paired reads☆53Updated 3 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 6 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- A Better Sequencing Simulator for Metagenomics☆19Updated 4 years ago
- CRyPTIC data processing pipelines☆32Updated 2 months ago
- LoFreq Version 3☆27Updated 3 years ago
- StrainFinder☆27Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆56Updated 5 years ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆18Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆26Updated last month
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- A pipeline for the identification of fungi in public metagenomics datasets☆16Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆89Updated last week
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ☆51Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated 5 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆19Updated 5 months ago
- Improvement of metagenome-assembled genomes☆48Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆67Updated last year
- Estimate metagenomic coverage and sequence diversity☆44Updated last month
- Sync paired-end FASTA/Q files and keep singleton reads☆18Updated 2 years ago
- Split Kmer Analysis☆62Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆51Updated last year
- A toolbox for improving metagenome-assembled genomes.☆63Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆50Updated this week