EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms
☆10Nov 30, 2014Updated 11 years ago
Alternatives and similar repositories for EnsembleAssembler
Users that are interested in EnsembleAssembler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 4 months ago
- ☆12Apr 21, 2016Updated 10 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆15Nov 3, 2017Updated 8 years ago
- LFQC: Fastq Compression Algorithm☆13Jan 6, 2016Updated 10 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- ☆11Apr 11, 2017Updated 9 years ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆18Aug 30, 2018Updated 7 years ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- An accurate base caller for Illumina non-patterned sequencing platforms☆13Mar 10, 2019Updated 7 years ago
- ☆11May 14, 2025Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- AYB2 -- All Your Base version 2. A base caller for the Illumina platform☆17Aug 11, 2020Updated 5 years ago
- Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction).☆20May 3, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automated pipeline for analyses of fungal ITS from the Illumina☆33May 1, 2025Updated last year
- ☆11Feb 16, 2021Updated 5 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- Specification for Markdown appropriate for scholarly content☆24Apr 27, 2013Updated 13 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated 2 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated 2 years ago
- Generate a slideshow using the slides that power the html5-slides presentation☆22Jun 22, 2010Updated 16 years ago
- Build docker container for @MaskRay's pcap-search☆12Oct 19, 2018Updated 7 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Mar 16, 2026Updated 4 months ago
- WARNING: This repository is no longer maintained ⚠️ This repository will not be updated. The repository will be kept available in read-on…☆11Nov 15, 2017Updated 8 years ago
- ☆25Feb 21, 2017Updated 9 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- XMSS (eXtended Merkle Signature Scheme ) in golang☆14Jun 3, 2019Updated 7 years ago
- writeup of some ctf challs☆11Apr 20, 2025Updated last year
- Using Datasette and CLIP embeddings to find similar faucets.☆24Sep 27, 2023Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Speaker materials for 2020 conference☆10Mar 7, 2021Updated 5 years ago
- Protein preparation for MD, made faster and easier !☆15Dec 18, 2023Updated 2 years ago
- Kernelized rank learning for personalized drug recommendation☆16Oct 8, 2018Updated 7 years ago