XuegongLab / HGC
fast hierarchical clustering for large-scale single-cell data
☆10Updated 3 years ago
Alternatives and similar repositories for HGC:
Users that are interested in HGC are comparing it to the libraries listed below
- ☆16Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 6 months ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆13Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- ☆10Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆33Updated last year
- ☆24Updated 3 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 4 months ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- ☆25Updated 3 years ago
- ☆18Updated 3 years ago
- Code and example of the D-SPIN framework☆22Updated last week
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆17Updated 4 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- ☆21Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 8 months ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆9Updated 10 months ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆29Updated last month
- ACTIONet single-cell analysis framework☆39Updated 7 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- ☆12Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year