fast hierarchical clustering for large-scale single-cell data
☆11Jul 11, 2021Updated 5 years ago
Alternatives and similar repositories for HGC
Users that are interested in HGC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated last month
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Bayesian structural time series in python☆13Mar 17, 2022Updated 4 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- ☆16Jul 24, 2026Updated last month
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Aug 8, 2024Updated 2 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- GrandPrix☆17May 27, 2019Updated 7 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated last year
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Linked Data Interface (LINDI) - cloud-friendly access to NWB data☆17Mar 19, 2026Updated 5 months ago
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated last month
- ☆15Sep 27, 2022Updated 3 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆28Sep 19, 2019Updated 6 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Transformer based region discovery in spatial transcriptomics (but mostly MERFISH) datasets☆19Mar 14, 2025Updated last year
- A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank☆13Sep 28, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 4 years ago
- Tools for assessing clustering robustness☆34Updated this week
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year
- Code for Slow Transition to Low-Dimensional Chaos in Heavy-Tailed Recurrent Neural Networks (NeurIPS 2025)☆21Jul 9, 2026Updated last month
- Accurate and fast cell marker gene identification with COSG☆66Updated this week
- Data analysis library for Python using "Dirichlet Process"-based models.☆21Mar 1, 2024Updated 2 years ago
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 10 months ago
- Empirical Bayes methods for single cell data☆18Oct 12, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆19Jul 24, 2026Updated last month
- Clone of the Bioconductor repository for the scRNAseq package.☆30Oct 10, 2025Updated 10 months ago
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 7 months ago
- Python playground for cell-type-specific biology☆14Updated this week
- ☆14Jul 1, 2025Updated last year