Alternatives and similar repositories for HGC

Users that are interested in HGC are comparing it to the libraries listed below

• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• chenlingantelope / HarmonizationSCANVI
  Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper
  ☆13Updated 3 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• pqiu / cooccurrence_clustering
  ☆14Updated 5 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated this week
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆24Updated 11 months ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated last year
• jwang-lab / scGNN
  scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
  ☆11Updated 5 years ago
• jlakkis / CarDEC
  ☆19Updated 4 years ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆17Updated last year
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• lanagarmire / Single-cell-drug-repositioning
  ☆17Updated last year
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆14Updated 7 years ago
• kundajelab / ENCODE_scatac
  ☆11Updated 2 years ago
• mukamel-lab / SingleCellFusion
  SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data
  ☆12Updated 3 years ago
• mqzhanglab / BSDE
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆10Updated 3 years ago
• YosefLab / totalVI_reproducibility
  ☆16Updated 3 years ago
• seasamgo / rescue
  Bootstrap imputation for scRNAseq data
  ☆12Updated 5 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• kmayerb / tcrdist2
  Quantifiable predictive features define epitope-specific T cell receptor repertoires
  ☆13Updated 3 years ago
• sdomanskyi / DigitalCellSorter
  Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
  ☆24Updated 4 years ago
• tarot0410 / BREMSC
  Novel joint clustering method with scRNA-seq and CITE-seq data
  ☆10Updated 4 years ago