Alternatives and similar repositories for HGC

Users that are interested in HGC are comparing it to the libraries listed below

• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 3 years ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• chenlingantelope / HarmonizationSCANVI
  Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper
  ☆13Updated 3 years ago
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• pqiu / cooccurrence_clustering
  ☆14Updated 5 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆28Updated last year
• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆14Updated 2 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated last year
• ZJUFanLab / scDeepSort_performance_comparison
  The source code and results for different methods on annotating external testing datsets of human and mouse.
  ☆12Updated 4 years ago
• mqzhanglab / BSDE
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆10Updated 3 years ago
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• mukamel-lab / SingleCellFusion
  SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data
  ☆12Updated 3 years ago
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆15Updated 7 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 3 years ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated 3 weeks ago
• mhu10 / scPanoView
  ☆11Updated 6 years ago
• qiaochen / VeloAE
  Low-dimensional Projection of Single Cell Velocity
  ☆28Updated 3 years ago
• epigen / scifiRNA-seq_publication
  The million-scale method for single-cell analysis
  ☆10Updated 2 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆17Updated 6 years ago
• MarioniLab / SpatialMouseAtlas2020
  Data processing and analysis scripts for our spatial profiling of embryos using seqFISH
  ☆16Updated 3 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆44Updated last year
• sdomanskyi / DigitalCellSorter
  Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
  ☆24Updated 4 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• klarman-cell-observatory / covid19-autopsy
  ☆11Updated 4 years ago