fast hierarchical clustering for large-scale single-cell data
☆10Jul 11, 2021Updated 4 years ago
Alternatives and similar repositories for HGC
Users that are interested in HGC are comparing it to the libraries listed below
Sorting:
- ☆29Sep 4, 2023Updated 2 years ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- MRtree R implementation☆13Mar 1, 2023Updated 3 years ago
- Bayesian structural time series in python☆13Mar 17, 2022Updated 4 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Dec 9, 2025Updated 3 months ago
- ☆14Updated this week
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated last year
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- GrandPrix☆16May 27, 2019Updated 6 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 10 months ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Sep 19, 2019Updated 6 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- Tools for assessing clustering robustness☆30Updated this week
- A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank☆12Sep 28, 2023Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 3 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Accurate and fast cell marker gene identification with COSG☆63Feb 8, 2026Updated last month
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 5 months ago
- Python playground for cell-type-specific biology☆12Jan 20, 2026Updated 2 months ago
- Assessing the purity of single cell population☆143Jun 3, 2022Updated 3 years ago
- ☆13Sep 29, 2023Updated 2 years ago
- Empirical Bayes methods for single cell data☆17Oct 12, 2020Updated 5 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Oct 10, 2025Updated 5 months ago
- The analysis repository for the Open Pediatric Cancer Project☆25Jul 9, 2025Updated 8 months ago
- ☆19Oct 27, 2021Updated 4 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- ☆14Jul 1, 2025Updated 8 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆26Feb 2, 2026Updated last month
- 哔哩哔哩 bilibili B站小粉红 名单。小粉红程度 是根据某团的粉丝获取勋章等级来的。把他们拉黑之后,以后看个电影解说,旅游片,以及其它视频就少了些zz言论。B站黑名单最高数量:黑名单数=500+int(粉丝数/10000)*20,其中上限不超过5000☆11Jul 13, 2019Updated 6 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago