ucdavis-bioinformatics / scRNA_shinyLinks
scRNA-seq Shiny App
☆14Updated 2 years ago
Alternatives and similar repositories for scRNA_shiny
Users that are interested in scRNA_shiny are comparing it to the libraries listed below
Sorting:
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆48Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆18Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated this week
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆29Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆38Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- Analysis pipeline for CUT&TAG data☆21Updated 5 years ago
- ☆20Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- binned motif enrichment analysis and visualisation☆44Updated 2 months ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- ☆53Updated last year
- ☆19Updated 5 years ago
- ☆12Updated 6 years ago