Python library for SBGN
☆11Apr 21, 2026Updated last week
Alternatives and similar repositories for libsbgnpy
Users that are interested in libsbgnpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆19Oct 8, 2024Updated last year
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 3 weeks ago
- SyBLaRS: Systems Biology Layout & Rendering Service☆12Nov 18, 2024Updated last year
- A web application to visualize and edit pathway models☆60Apr 18, 2026Updated last week
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python utilities for SBML☆41Updated this week
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆23Jul 22, 2023Updated 2 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 3 months ago
- Python solution for the application of machine learning to Pop PK model selection.☆31Mar 16, 2026Updated last month
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wr…☆21Apr 18, 2026Updated last week
- ☆10Jul 21, 2022Updated 3 years ago
- Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry☆150Apr 9, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Collection of talks given in the ML reading group@IIITD☆11Mar 31, 2021Updated 5 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆31Mar 27, 2026Updated last month
- BRENDA parser in python☆23May 16, 2022Updated 3 years ago
- iGem Marburg 2019☆21Dec 7, 2019Updated 6 years ago
- DNA overhang misannealing data for Python☆13May 15, 2025Updated 11 months ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 6 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.☆15Apr 2, 2026Updated 3 weeks ago
- Processing and Visualization of Proteome-wide MS-CETSA data☆13Feb 9, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code for "Theoretical Foundations of Deep Selective State-Space Models" (NeurIPS 2024)☆16Jan 7, 2025Updated last year
- Prototype for sparse automatic differentiation in JAX + Julia☆22Jun 17, 2025Updated 10 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- ☆14Dec 20, 2024Updated last year
- Human Protein Atlas - Single Cell Classification 2nd place solution Dual Head pipeline☆13May 25, 2021Updated 4 years ago
- JBrowse 2 plugin for editing annotations on an Apollo server☆15Apr 22, 2026Updated last week
- Import SBML dynamic models into the Julia SciML ecosystem for jump (Gillespie), SDE, and ODE simulations☆24Updated this week
- Curated list of JAX Resources and Packages☆39Mar 2, 2026Updated last month
- A complete example of batched refactorization in cuSOLVER.☆13Dec 22, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Schedule free optimiser implemented in JAX using Optimistix☆15May 29, 2024Updated last year
- Transform Jupyter Notebook to a beautifully formated Ebook☆18May 18, 2020Updated 5 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- Julia for Systems Biology Workshop @JuliaCon 2024☆13Jul 8, 2024Updated last year
- ☆16Dec 8, 2022Updated 3 years ago
- A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.☆21Mar 21, 2026Updated last month
- Single species module discovery☆14Oct 18, 2022Updated 3 years ago