Alternatives and similar repositories for orthogene:

Users that are interested in orthogene are comparing it to the libraries listed below

• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆56Updated 3 months ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆87Updated last month
• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆28Updated 11 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆50Updated 6 months ago
• YosefLab / ImpulseDE2
  ☆38Updated 2 years ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆33Updated 6 years ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆56Updated last year
• Core-Bioinformatics / bulkAnalyseR
  ☆27Updated last year
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆100Updated last week
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• maxplanck-ie / 10X_snakepipe
  A snakemake pipeline for 10X genomics cellranger
  ☆20Updated 3 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 5 months ago
• gangwug / MetaCycle
  An integrated R package to evaluate periodicity in large scale data
  ☆27Updated 2 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated last year
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆28Updated 5 months ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated last month
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆29Updated 4 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆33Updated last week
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆32Updated 8 months ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆25Updated last year
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated 11 months ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆22Updated 4 months ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆27Updated 5 months ago
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆51Updated 3 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆24Updated last year
• andygxzeng / BoneMarrowMap
  A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …
  ☆45Updated 3 weeks ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆40Updated 3 weeks ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆28Updated last month
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆41Updated 4 months ago